Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1920 120 2e-22
seq2052 109 4e-19
seq2379 91.5 1e-13
>seq1920
Length=25525
Score = 120 bits (132), Expect = 2e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167
||||| || |||||||||||||| || || |||||||| || | | ||| | || ||
Sbjct 16736 CACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGAGTCCGTCCATCTTC 16795
Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227
|| || || ||||| || || | ||| || || || | |||| ||| || ||||||
Sbjct 16796 TAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 16855
Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287
|| || ||| ||||| | || ||| || | || || || || | ||||| || ||
Sbjct 16856 GATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTCGACCTCAAGGGTAATTGTCTT 16915
Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|||||| | |||||||||||| |||||||||
Sbjct 16916 ACCCGTGAGGGTTTTCACGAAGATCTGCATG 16946
>seq2052
Length=20734
Score = 109 bits (120), Expect = 4e-19
Identities = 209/305 (69%), Gaps = 6/305 (2%)
Strand=Plus/Plus
Query 6183 CGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAG 6242
||| |||| |||||| |||||||||||||| ||| ||||||| ||||| ||||
Sbjct 5995 CGTGATGTCACGGACGTCTTCTACCGCTACAAGATGGAGCGCATCCAGACCAAGATCGAA 6054
Query 6243 GGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGC-CTGAA--GTCGCTAAGGCG 6299
|| ||||| ||||| || || || | |||||| || | | | | ||||| || ||
Sbjct 6055 GGCAAGGGCAACGGCATCAAGACGG---TTGTCACCAACCTCAGCAGCGTCGCCCAGTCG 6111
Query 6300 CTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACG 6359
|||| ||||| | |||||| || || || || || | ||| || || || |||||
Sbjct 6112 CTCGCCCGCCCCGGAGCCTACCTGATCAAGTACTTTGGTTTCGAGCTGGGTGCCCAGACA 6171
Query 6360 CAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTG 6419
| | || | |||| |||| ||| | ||||| | || | | ||||||||
Sbjct 6172 AACATCGACCCGCCCGACGACCGCTGGATCATCAACGGTGCCCACGAGGCAGCCAAGCTT 6231
Query 6420 CAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCG 6479
||||||| || ||||| || || ||||||||| || || | | ||| | |||||
Sbjct 6232 CAGGACTATCTCGACGGTTTCATCTCCAAGTTTGTTCTCTGCAAGAAGTGCAAGAACCCC 6291
Query 6480 GAGAC 6484
|||||
Sbjct 6292 GAGAC 6296
>seq2379
Length=13478
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||| || | || ||||| || | ||| || ||| |||||| || || |||||||| |
Sbjct 4557 TACCGCCACGCAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCGG 4616
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | || |||| || | || ||||||||||| || || || || ||||| | ||
Sbjct 4617 AGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGGGG 4676
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||| || |||||| ||| || ||| || || | || ||||| | || |
Sbjct 4677 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGA 4736
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| || | || || || || || || | ||| || ||||| |||||||||
Sbjct 4737 CCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCATG 4786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334936231211897
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |