Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1920 120 2e-22 seq2052 109 4e-19 seq2379 91.5 1e-13 >seq1920 Length=25525 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| || |||||||||||||| || || |||||||| || | | ||| | || || Sbjct 16736 CACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGAGTCCGTCCATCTTC 16795 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || || || ||||| || || | ||| || || || | |||| ||| || |||||| Sbjct 16796 TAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 16855 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||| ||||| | || ||| || | || || || || | ||||| || || Sbjct 16856 GATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTCGACCTCAAGGGTAATTGTCTT 16915 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||| | |||||||||||| ||||||||| Sbjct 16916 ACCCGTGAGGGTTTTCACGAAGATCTGCATG 16946 >seq2052 Length=20734 Score = 109 bits (120), Expect = 4e-19 Identities = 209/305 (69%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 6183 CGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAG 6242 ||| |||| |||||| |||||||||||||| ||| ||||||| ||||| |||| Sbjct 5995 CGTGATGTCACGGACGTCTTCTACCGCTACAAGATGGAGCGCATCCAGACCAAGATCGAA 6054 Query 6243 GGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGC-CTGAA--GTCGCTAAGGCG 6299 || ||||| ||||| || || || | |||||| || | | | | ||||| || || Sbjct 6055 GGCAAGGGCAACGGCATCAAGACGG---TTGTCACCAACCTCAGCAGCGTCGCCCAGTCG 6111 Query 6300 CTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACG 6359 |||| ||||| | |||||| || || || || || | ||| || || || ||||| Sbjct 6112 CTCGCCCGCCCCGGAGCCTACCTGATCAAGTACTTTGGTTTCGAGCTGGGTGCCCAGACA 6171 Query 6360 CAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTG 6419 | | || | |||| |||| ||| | ||||| | || | | |||||||| Sbjct 6172 AACATCGACCCGCCCGACGACCGCTGGATCATCAACGGTGCCCACGAGGCAGCCAAGCTT 6231 Query 6420 CAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCG 6479 ||||||| || ||||| || || ||||||||| || || | | ||| | ||||| Sbjct 6232 CAGGACTATCTCGACGGTTTCATCTCCAAGTTTGTTCTCTGCAAGAAGTGCAAGAACCCC 6291 Query 6480 GAGAC 6484 ||||| Sbjct 6292 GAGAC 6296 >seq2379 Length=13478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || ||||| || | ||| || ||| |||||| || || |||||||| | Sbjct 4557 TACCGCCACGCAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCGG 4616 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| || | || ||||||||||| || || || || ||||| | || Sbjct 4617 AGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGGGG 4676 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| ||| || ||| || || | || ||||| | || | Sbjct 4677 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGA 4736 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | || || || || || || | ||| || ||||| ||||||||| Sbjct 4737 CCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCATG 4786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334936231211897