Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2379 127 2e-24
seq1920 96.9 3e-15
>seq2379
Length=13478
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | || || || || |||| || || || || | |
Sbjct 4785 ATGCAGATTTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 4726
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | |||| || ||||| ||||||||||| || || || |||||
Sbjct 4725 GATACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 4666
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || |||||||| || ||| | ||||| |||||| ||||||||||||||
Sbjct 4665 CAGCGTCTGATTTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACGCTCTCCGATTACAAC 4606
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || |||||| | ||| | || |||| |||| || |||
Sbjct 4605 ATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGTCTGCGTGGCGGT 4558
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | || || || ||| |||| || || ||||| | |
Sbjct 4329 ATGCAGATTTTCGTAAAGACGCTTACGGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 4270
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || | || ||||| || ||||||||||| || || || || ||
Sbjct 4269 GACACGATTGACAATGTGAAGTCTAAAATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 4210
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || ||||| || || ||||| ||||| |||||| |||||| | || || ||||||
Sbjct 4209 CAGCGCCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACGCTATCGGACTACAAC 4150
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || ||||| ||
Sbjct 4149 ATCCAGAAGGAATCGAC 4133
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | || || || ||| | || | || || || | |
Sbjct 4101 ATGCAGATTTTCGTCAAGACGCTGACAGGGAAGACGATTACCTTGGAGGTTGAGTCATCA 4042
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| | | || || ||||| ||||||||||| ||||| || || ||
Sbjct 4041 GATACGATTGACAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 3982
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| ||||| ||| | ||||| ||||||| |||| || |||||
Sbjct 3981 CAGCGGCTCATTTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCGGACTACAAT 3922
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || ||||| ||
Sbjct 3921 ATCCAGAAGGAATCGAC 3905
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || ||||||| || || || | |
Sbjct 4557 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCG 4498
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || || |||||||||||||| |||||||| ||
Sbjct 4497 GACACCATCGATAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 4438
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| ||| | |||||| || ||| | || || ||||||
Sbjct 4437 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGACGGACCCTTTCGGACTACAAC 4378
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 4377 ATTCAGAAGGAGTCGAC 4361
>seq1920
Length=25525
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || ||||| | || ||||| || | || ||||| || || | || |
Sbjct 16945 ATGCAGATCTTCGTGAAAACCCTCACGGGTAAGACAATTACCCTTGAGGTCGAGAGCAGC 16886
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || |||| || || || ||||||||||| || || || || ||
Sbjct 16885 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 16826
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || |||||||| ||| |||| ||| || || ||||||||||||||
Sbjct 16825 CAGCGCTTGATCTTCGCCGGCAAGCAGCTAGAAGATGGACGGACTCTCTCCGATTACAAC 16766
Query 22399 ATTCAAAAAGA 22409
|| || || ||
Sbjct 16765 ATCCAGAAGGA 16755
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419714254826155
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |