Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2379 122 8e-23
seq1920 122 8e-23
seq2494 102 8e-17
seq1979 96.9 3e-15
seq2400 89.7 5e-13
>seq2379
Length=13478
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | |||| ||||| || | ||| ||||| || ||||| ||||| ||
Sbjct 4331 CCACCGCGGAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAA 4390
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || ||||| || |||||| | |||| |||||||| ||||| ||
Sbjct 4391 AGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGG 4450
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| || ||||| | |||| |||||||| ||||||
Sbjct 4451 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCCGACGACTCGACC 4510
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || ||||| ||||| || || || || ||||||||
Sbjct 4511 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 4557
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| || | ||| | || ||||| || || || ||||||||| | ||||||
Sbjct 4571 CGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGGCCG 4630
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| ||||| || | |||| ||||||||||| || || ||||||||||||
Sbjct 4631 TCCTCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTG 4690
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| || || ||||| |||| |||| ||| || | | |||||| |||| ||| |
Sbjct 4691 TCCTGAATCTTGGACTTGACGTTG-TCGATGGTATCAGAAGACTCGACCTCGAGGGTGAT 4749
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| ||||| || || || || || ||||||||||||
Sbjct 4750 GGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCATG 4786
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | || || || || || || ||||| ||
Sbjct 4103 CCACCACGGAGCCGCAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAT 4162
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || | ||| || |||||| |||| | |||||||| || || ||
Sbjct 4163 AGCGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGG 4222
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| |||||| ||| | | || | ||||||| ||| ||
Sbjct 4223 ATGCCCTCCTTGTCCTGGATTTTAGACTTCACATTGTCAATCGTGTCCGACGACTCCACC 4282
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | ||| ||||| || || || ||||| ||||||||||||
Sbjct 4283 TCCAGGGTGATCGTCTTGCCCGTAAGCGTCTTTACGAAAATCTGCATG 4330
>seq1920
Length=25525
Score = 122 bits (134), Expect = 8e-23
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942
||| ||||| || | || | ||||| || | || ||| || || || ||||||||
Sbjct 16715 TGCGCCACCACGGAGCCGTAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATC 16774
Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002
| | || || ||| |||||||| || || ||| ||||||| |||||||| || ||
Sbjct 16775 GGAGAGAGTCCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGG 16834
Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062
|| ||||||||||||||| ||| || ||||| | |||| ||||| | |||||
Sbjct 16835 CGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTC 16894
Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117
||| || | ||| | || || || || || ||||| || || ||||||||||||
Sbjct 16895 GACCTCAAGGGTAATTGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCATGGCT 16949
>seq2494
Length=11727
Score = 102 bits (112), Expect = 8e-17
Identities = 134/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 146038 TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGC 146097
|| ||||| |||| | || || ||||||| |||||||||||||| || || || ||
Sbjct 3108 TCAACGAGATCCTTCAGCAGCCACGGGTTGACAACCTGAAACTCGCCCGCCAGCACACGG 3049
Query 146098 CTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCC 146157
| | || | |||| ||| |||||||||| | |||||||| || || ||||||| |
Sbjct 3048 CGCGAGTAGATGTTGGACGTGTACGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGAC 2989
Query 146158 GTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAAT 146216
|||| || || |||||| ||||||| || | ||| | |||||||| || ||| ||
Sbjct 2988 GTCGACGCTGTTGGCATGGGGGCCACCAACAGACTGTTGCGGACGCCGTGCTCCTTG-AT 2930
Query 146217 CTT 146219
|||
Sbjct 2929 CTT 2927
>seq1979
Length=23555
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || |||||||| || |
Sbjct 2775 CCACCACGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGAC 2834
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || ||||| |||||| |||||||| ||||| ||
Sbjct 2835 AGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 2894
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| ||||||| ||||||
Sbjct 2895 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 2954
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
|| | ||| | || ||||| || || || || || ||
Sbjct 2955 TCCAAGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAA 2992
>seq2400
Length=47555
Score = 89.7 bits (98), Expect = 5e-13
Identities = 241/363 (66%), Gaps = 17/363 (5%)
Strand=Plus/Plus
Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282
||||| ||||| || || ||||||||| || || | ||||| |||||||||||| ||
Sbjct 7582 ATGCCTGGCCTGACCTTCTCCAACGAGCTTATTTCTCGTGACGAGGGCCTGCACACCGAC 7641
Query 47283 TT----TGCCTGTCTCTACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTGCCCAC 47335
|| |||||| || | || || | ||| || | | ||| || || |
Sbjct 7642 TTCGCTTGCCTG-CTGTTCTCTCATCTGAAGAACCGCCCCAGCAAG---GAGATGATC-- 7695
Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395
||| || || | | ||| || ||| |||||| |||||| || ||||||| ||
Sbjct 7696 ---CAG-GAGATAATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCCCT 7751
Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGC 47455
||| || | | || |||||| | | |||| ||||||| || || || ||
Sbjct 7752 TCCCTGCGCTCTGCTCGGCATGAACTCCACACTCATGAAGCAGTACATTGAGTTCGTTGC 7811
Query 47456 CGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGA 47515
||||||||| || ||| || || ||| | |||| || || || |||||
Sbjct 7812 CGACCGCCTTCTGGTTGCCCTCGGCAATGATAAGGTGTACCGTTCCACCAACCCCTTCGA 7871
Query 47516 GTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGA 47575
|| ||| | ||||| || || | |||||||||||||| ||||||||||| ||||| ||
Sbjct 7872 CTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGA 7931
Query 47576 ATA 47578
||
Sbjct 7932 CTA 7934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475484829116880
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