Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2379 122 8e-23 seq1920 122 8e-23 seq2494 102 8e-17 seq1979 96.9 3e-15 seq2400 89.7 5e-13 >seq2379 Length=13478 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || ||||| ||||| || Sbjct 4331 CCACCGCGGAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAA 4390 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || |||||| | |||| |||||||| ||||| || Sbjct 4391 AGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGG 4450 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| |||||||| |||||| Sbjct 4451 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCCGACGACTCGACC 4510 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || || || |||||||| Sbjct 4511 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 4557 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | || ||||| || || || ||||||||| | |||||| Sbjct 4571 CGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGGCCG 4630 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| ||||| || | |||| ||||||||||| || || |||||||||||| Sbjct 4631 TCCTCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTG 4690 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || || ||||| |||| |||| ||| || | | |||||| |||| ||| | Sbjct 4691 TCCTGAATCTTGGACTTGACGTTG-TCGATGGTATCAGAAGACTCGACCTCGAGGGTGAT 4749 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || || || || |||||||||||| Sbjct 4750 GGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCATG 4786 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || || || || || || ||||| || Sbjct 4103 CCACCACGGAGCCGCAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAT 4162 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || |||||| |||| | |||||||| || || || Sbjct 4163 AGCGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGG 4222 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| |||||| ||| | | || | ||||||| ||| || Sbjct 4223 ATGCCCTCCTTGTCCTGGATTTTAGACTTCACATTGTCAATCGTGTCCGACGACTCCACC 4282 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||| ||||| || || || ||||| |||||||||||| Sbjct 4283 TCCAGGGTGATCGTCTTGCCCGTAAGCGTCTTTACGAAAATCTGCATG 4330 >seq1920 Length=25525 Score = 122 bits (134), Expect = 8e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| ||||| || | || | ||||| || | || ||| || || || |||||||| Sbjct 16715 TGCGCCACCACGGAGCCGTAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATC 16774 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 | | || || ||| |||||||| || || ||| ||||||| |||||||| || || Sbjct 16775 GGAGAGAGTCCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGG 16834 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || ||||||||||||||| ||| || ||||| | |||| ||||| | ||||| Sbjct 16835 CGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTC 16894 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||| || | ||| | || || || || || ||||| || || |||||||||||| Sbjct 16895 GACCTCAAGGGTAATTGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCATGGCT 16949 >seq2494 Length=11727 Score = 102 bits (112), Expect = 8e-17 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 146038 TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGC 146097 || ||||| |||| | || || ||||||| |||||||||||||| || || || || Sbjct 3108 TCAACGAGATCCTTCAGCAGCCACGGGTTGACAACCTGAAACTCGCCCGCCAGCACACGG 3049 Query 146098 CTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCC 146157 | | || | |||| ||| |||||||||| | |||||||| || || ||||||| | Sbjct 3048 CGCGAGTAGATGTTGGACGTGTACGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGCGAC 2989 Query 146158 GTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAAT 146216 |||| || || |||||| ||||||| || | ||| | |||||||| || ||| || Sbjct 2988 GTCGACGCTGTTGGCATGGGGGCCACCAACAGACTGTTGCGGACGCCGTGCTCCTTG-AT 2930 Query 146217 CTT 146219 ||| Sbjct 2929 CTT 2927 >seq1979 Length=23555 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || |||||||| || | Sbjct 2775 CCACCACGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGAC 2834 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || ||||| |||||| |||||||| ||||| || Sbjct 2835 AGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 2894 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| ||||||| |||||| Sbjct 2895 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 2954 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || | ||| | || ||||| || || || || || || Sbjct 2955 TCCAAGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAA 2992 >seq2400 Length=47555 Score = 89.7 bits (98), Expect = 5e-13 Identities = 241/363 (66%), Gaps = 17/363 (5%) Strand=Plus/Plus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 ||||| ||||| || || ||||||||| || || | ||||| |||||||||||| || Sbjct 7582 ATGCCTGGCCTGACCTTCTCCAACGAGCTTATTTCTCGTGACGAGGGCCTGCACACCGAC 7641 Query 47283 TT----TGCCTGTCTCTACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTGCCCAC 47335 || |||||| || | || || | ||| || | | ||| || || | Sbjct 7642 TTCGCTTGCCTG-CTGTTCTCTCATCTGAAGAACCGCCCCAGCAAG---GAGATGATC-- 7695 Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395 ||| || || | | ||| || ||| |||||| |||||| || ||||||| || Sbjct 7696 ---CAG-GAGATAATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCCCT 7751 Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGC 47455 ||| || | | || |||||| | | |||| ||||||| || || || || Sbjct 7752 TCCCTGCGCTCTGCTCGGCATGAACTCCACACTCATGAAGCAGTACATTGAGTTCGTTGC 7811 Query 47456 CGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGA 47515 ||||||||| || ||| || || ||| | |||| || || || ||||| Sbjct 7812 CGACCGCCTTCTGGTTGCCCTCGGCAATGATAAGGTGTACCGTTCCACCAACCCCTTCGA 7871 Query 47516 GTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGA 47575 || ||| | ||||| || || | |||||||||||||| ||||||||||| ||||| || Sbjct 7872 CTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGA 7931 Query 47576 ATA 47578 || Sbjct 7932 CTA 7934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475484829116880