Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1920 125 2e-23
seq2379 116 9e-21
seq1979 114 3e-20
>seq1920
Length=25525
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||||||||| |||||| |||| |||||| || | | ||||| |||||||
Sbjct 16734 AGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGAGTCCGTCCATCT 16793
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||||||||| | ||||||||||| || || || || |||
Sbjct 16794 TCTAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 16853
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| ||||| | | || || || | || || |||
Sbjct 16854 TGGATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTCGACCTCAAGGGTAATTGTC 16913
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| |||||||| || || ||
Sbjct 16914 TTACCCGTGAGGGTTTTCACGAAGATCTG 16942
>seq2379
Length=13478
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| || ||||| ||||| |||| |||||||| | | || | || ||
Sbjct 3890 AGCACCAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGAGAGGGTGCGGCCGTCC 3949
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || || ||||| ||||||||||| || ||| || || |||
Sbjct 3950 TCCAGCTGCTTGCCCGCAAAAATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 4009
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| || | || |||| || || || ||||| || ||||||
Sbjct 4010 TGAATCTTCGACTTCACGTTGTCAATCGTATCTGATGACTCAACCTCCAAGGTAATCGTC 4069
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || ||||| ||
Sbjct 4070 TTCCCTGTCAGCGTCTTGACGAAAATCTG 4098
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || ||||| |||||||| ||||| |||| ||||||||| | | ||
Sbjct 4109 CGGAGCCGCAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGATAGCGTG 4168
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| |||| |||||| || |||||||| || ||||||||||| || || ||
Sbjct 4169 CGGCCATCCTCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCC 4228
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| || || |||||| || | ||||| | | || || ||||
Sbjct 4229 TCCTTGTCCTGGATTTTAGACTTCACATTGTCAATCGTGTCCGACGACTCCACCTCCAGG 4288
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| ||||| || || || || ||||| ||
Sbjct 4289 GTGATCGTCTTGCCCGTAAGCGTCTTTACGAAAATCTG 4326
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || ||||| || ||||||||||| || | ||||||||| | | |||
Sbjct 4337 CGGAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTC 4396
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||| || |||||||| || ||||| || || ||||||||||| || || ||
Sbjct 4397 CGTCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGGATACCC 4456
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| |||| |||||| | | || || ||||
Sbjct 4457 TCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCCGACGACTCGACCTCCAGA 4516
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || || || || || ||
Sbjct 4517 GTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTG 4554
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| || || || || |||||||| |||| |||||| || | | ||
Sbjct 4565 CGCAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTG 4624
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||||||||| || || ||||||||||| ||||| || ||
Sbjct 4625 CGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGGGGGGATGCCC 4684
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| ||| |||| ||| || | | || || || |
Sbjct 4685 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGACCTCGAGG 4744
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| || || || ||||| ||
Sbjct 4745 GTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTG 4782
>seq1979
Length=23555
Score = 114 bits (126), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| |||||||||||||| |||| |||||||||| || || | || ||
Sbjct 2790 AGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGGCCGTCC 2849
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || || ||||| || ||||||||||| || || || || |||
Sbjct 2850 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 2909
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| ||||| | | || || ||||| ||||| |||
Sbjct 2910 TGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTC 2969
Query 199598 TTACCCGTGAGAGTTTTCACAAA 199620
|| ||||| || || ||||| ||
Sbjct 2970 TTGCCCGTAAGGGTCTTCACGAA 2992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178881013045029
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |