Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2400 181 1e-40 seq2379 150 2e-31 seq1920 102 8e-17 >seq2400 Length=47555 Score = 181 bits (200), Expect = 1e-40 Identities = 206/276 (75%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| || || | || ||||| ||||||||||| ||| || || Sbjct 7318 GTAGGTGTCGATGAGCAGGGAGTATGTCTCGGAGTGGACGTTCTCCATCATGATCTGGAA 7259 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||||||||| || ||||| |||||| || || | ||| ||||| || || || Sbjct 7258 GCCGTAAAAGCAGCGAGCCTCCGGCACCTGGACCTCAGCACTGAAGCGCTCAACTAGGTT 7199 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||||||||| |||||| || || ||||| | |||| || ||| ||| Sbjct 7198 CTCGTTGACGATGCCGTCGGAGGCGGCAAAGAACGCCAGGATGTGCGAGACGAAGAAGCG 7139 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | ||||||| ||| | ||||||| || |||||||| ||||| | |||||| Sbjct 7138 CTCATCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGAGAGGTCGATCTCCTC 7079 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| ||||| |||||| || |||||||| Sbjct 7078 AGCAGTCCAGAACGAAGCCTCGTGCTTCTTGTACAT 7043 >seq2379 Length=13478 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || || || ||| | || || ||| | | Sbjct 4101 ATGCAGATTTTCGTCAAGACGCTGACAGGGAAGACGATTACCTTGGAGGTTGAGTCATCA 4042 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| | || || || | ||||| ||||| |||||| | ||||| Sbjct 4041 GATACGATTGACAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 3983 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||||||||||| |||||||| |||||||| |||| ||||||||| |||||||| Sbjct 3982 GCAGCGGCTCATTTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCGGACTACAA 3923 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||| |||||| |||||||||| ||||||| ||| || | ||||||| Sbjct 3922 TATCCAGAAGGAATCGACGCTGCACCTGGTGCTTCGTCTGCGTGGCGGCC 3873 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | | Sbjct 4557 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCG 4498 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| || || ||||||| Sbjct 4497 GACACCATCGATAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCA 4439 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| ||||| ||||| || || | || ||||| |||||||| Sbjct 4438 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGACGGACCCTTTCGGACTACAA 4379 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || ||||| |||||||||| |||||||||| Sbjct 4378 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 4343 Score = 129 bits (142), Expect = 6e-25 Identities = 162/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| ||||| |||||||| || |||||| | || || ||| | | Sbjct 4329 ATGCAGATTTTCGTAAAGACGCTTACGGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 4270 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | || || | | || ||||||| ||||| ||||| || |||||| |||| Sbjct 4269 GACACGATTGACAATG-TGAAGTCTAAAATCCAGGACAAGGAGGGCAT-CCCGCCAGACC 4212 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||| |||| || | ||||| || ||||||| Sbjct 4211 AGCAGCGCCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACGCTATCGGACTACA 4152 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| |||||| |||| || || |||||||||| Sbjct 4151 ACATCCAGAAGGAATCGACTCTTCACCTGGTGCTGCG 4115 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | | Sbjct 4785 ATGCAGATTTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 4726 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | ||||| ||||| || ||| | || || Sbjct 4725 GATACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCA 4667 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| || || || ||||| || |||| ||||| ||| ||| ||||| Sbjct 4666 GCAGCGTCTGATTTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACGCTCTCCGATTACAA 4607 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || |||||| | || |||||| || | ||||| Sbjct 4606 CATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGTCTGCGTGGCGG 4559 >seq1920 Length=25525 Score = 102 bits (112), Expect = 8e-17 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| |||||||| || || || ||| | || |||||| || | Sbjct 16945 ATGCAGATCTTCGTGAAAACCCTCACGGGTAAGACAATTACCCTTGAGGTCGAGAGCAGC 16886 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | || || |||| ||||| ||||| || |||||| ||||| Sbjct 16885 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACCA 16827 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| ||||| || || | || || ||| ||| ||||| Sbjct 16826 GCAGCGCTTGATCTTCGCCGGCAAGCAGCTAGAAGATGGACGGACTCTCTCCGATTACAA 16767 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| ||| || || || ||||||| || Sbjct 16766 CATCCAGAAGGAGAGC-ACTCTCCACCTGGTGCTACG 16731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500156000446080