Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2072 230 3e-55
seq18 104 3e-17
>seq2072
Length=20114
Score = 230 bits (254), Expect = 3e-55
Identities = 430/629 (68%), Gaps = 12/629 (2%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||| ||| || || || ||||| | ||||| || ||||||||
Sbjct 11128 TCGAAGTCCTCACCACCCAGGTGAGTGTCACCAGCGGTAGACTTGACCTCGAAGATACCC 11069
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | || || ||||| || |||||||||||||| || || || || |||
Sbjct 11068 TCCTCAATGGTGAGCAGAGACACATCGAAAGTACCACCACCCAGATCGAAGATCAGCACG 11009
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | || ||||| || |||||||| || || || || || || || ||
Sbjct 11008 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTAGGCTCG 10949
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
||||| ||||| || ||| ||||| || || | ||||| ||||| || || ||
Sbjct 10948 TTAATGATACGCAGGACGTTGAGGCCGGCGATCAGACCAGCATCCTTCGTAGCCTGGCGC 10889
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || ||||| |||||||| ||||| || | ||| || | | || | ||| ||
Sbjct 10888 TGGGAGTCGTTGAAGTAGGCGGGGACAGTGATGACAGCATTGTTAACGGTGCCACCAAGG 10829
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || ||| | || ||| ||||| || ||||| || |||||||| |||| |
Sbjct 10828 TAAGACTCGGCGGTCTCACGCATCTTGGTGAGGACCATGGAGGAAATCTCCTCAGGAGTG 10769
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876
||||| ||| | || || || || || || || || ||||| || || |||| |
Sbjct 10768 AACTGCTTCTTCTCGCCCTTGAACTCGACCTCGATGATGGGCTT----GC--CACCCTTG 10715
Query 7877 ATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933
||| || | | | | ||||| ||| | ||||||| || | ||
Sbjct 10714 TCAACGATAGTGAAAGGGAAGTGCTTCATGTCGGCCTGGACCTCGGCATCGGCGAAACGA 10655
Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993
| || || || |||||||| || || || ||||| | |||||||||||| ||||||
Sbjct 10654 CGGCCAATGAGCCGCTTTGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTC 10595
Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053
|| || || || ||||| | || || | | ||||| || || ||| | || || ||
Sbjct 10594 TTGGCAGCATCACCGATCAACCGCTC---AGTGTCCGTGAAGGCCACGAAAGACGGTGTG 10538
Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAAT 8082
|| || || || ||||| || ||||||||
Sbjct 10537 GTGCGGTTACCCTGGTCATTTGCAATAAT 10509
>seq18
Length=8942
Score = 104 bits (114), Expect = 3e-17
Identities = 185/267 (69%), Gaps = 11/267 (4%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||| | || || || || || ||||| || || || | ||
Sbjct 8244 TCGAAATCCTCACCACCAAGATGGGTGTCACCGGCAGTCGCAAGAACCTCGAAAACGCCC 8185
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAGT 7573
|| ||| || | || |||||||| ||||||||||| ||||| | |||||
Sbjct 8184 TGATCGATGGATAGAAGAGACACATCAAAAGTACCACCACCAAGGTCGTACACAATGA-- 8127
Query 7574 ACGTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632
|| | || ||| | | | |||| || ||||| || ||||| || ||||| || ||
Sbjct 8126 ----TC-TGGCGCTCGCCATCGGTCTTGTCAAGACCATAGGCGATCGCAGCCGCGGTGGG 8072
Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692
|| || | |||||| ||| ||||||||||||||| || | ||||| || || || ||
Sbjct 8071 CTCGTTGACAATACGCAGAACGTTCAGGCCAGCAATGGTGCCGGCATCCTTGGTAGCCTG 8012
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGG 7719
|| || ||||| |||||||| ||
Sbjct 8011 GCGCTGGTTGTCGTTGAAGTAGGCAGG 7985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635111467477080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |