Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2379 104 2e-17
seq1920 98.7 6e-16
seq1979 82.4 5e-11
>seq2379
Length=13478
Score = 104 bits (114), Expect = 2e-17
Identities = 142/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| |||||||||||| | ||| |||| || ||||| || || || ||
Sbjct 4367 TCCTTCTGAATGTTGTAGTCCGAAAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAA 4426
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||||||||||| ||||| |||||
Sbjct 4427 ATCAGGCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTGAC---- 4482
Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||||| | ||| | ||| || || | || ||||| || || || || |||||
Sbjct 4483 GTTATCGATGGTGTCCGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTT 4542
Query 34967 CACAAAGATCTGCATA 34982
|| ||||||||||||
Sbjct 4543 GACGAAGATCTGCATA 4558
Score = 100 bits (110), Expect = 2e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||| || || |||||||| ||| | || | || |||||||| || || |||||
Sbjct 3910 TTCCTTCTGGATATTGTAGTCCGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAA 3969
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || || ||||||||| | || | ||||||||||| ||||||| || |||
Sbjct 3970 AATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTT 4029
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| |||| || | |||||| || | ||| || || || || || || ||||| ||
Sbjct 4030 GTCAATCGTATCTGATGACTCAACCTCCAAGGTAATCGTCTTCCCTGTCAGCGTCTTGAC 4089
Query 34970 AAAGATCTGCATA 34982
|| |||||||||
Sbjct 4090 GAAAATCTGCATA 4102
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || || || || | || | || || ||||| |||||||||||
Sbjct 4595 TCCTTCTGGATGTTGTAATCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAA 4654
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| || | || | ||||||||||| |||||| ||||||
Sbjct 4655 ATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 4714
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| | ||| || |||| ||| ||||| || || ||||| ||||| ||
Sbjct 4715 TCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACG 4774
Query 34971 AAGATCTGCAT 34981
|| ||||||||
Sbjct 4775 AAAATCTGCAT 4785
>seq1920
Length=25525
Score = 98.7 bits (108), Expect = 6e-16
Identities = 151/213 (71%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||||| || ||||| ||||| || || || || | ||| |||| ||
Sbjct 16737 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGAGTCCGTCCATCTTCT 16796
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || ||||| || || | || |||||||| |||| | |||||||||||
Sbjct 16797 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 16856
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || | | ||| || || | ||| || ||
Sbjct 16857 ATCTTGGACTTGAC--AT--TGTCGATAGTGTCGCTGCTCTCGACCTCAAGGGTAATTGT 16912
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| |||||||| || ||||| |||||||||||
Sbjct 16913 CTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 16945
>seq1979
Length=23555
Score = 82.4 bits (90), Expect = 5e-11
Identities = 128/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || ||||| || ||| | || | || || ||||| || || |||||
Sbjct 2811 TCCTTCTGGATATTGTAGTCAGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCAAAG 2870
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| |||| | ||||||||||| ||||| |||||
Sbjct 2871 ATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 2930
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || || ||| || || | ||| ||||| || ||||| || ||||||||
Sbjct 2931 TCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTGCCCGTAAGGGTCTTCACG 2990
Query 34971 AAG 34973
|||
Sbjct 2991 AAG 2993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324622968959736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |