Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2379 109 4e-19 seq1920 93.3 3e-14 >seq2379 Length=13478 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || ||||| || || || |||||||| || || Sbjct 3874 GCCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGA 3933 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| || ||||| || || ||||| || || | ||| Sbjct 3934 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAAATGAGCCGCTGCTGGTCTGGGGG 3993 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| |||||| || || | | | ||||| | ||| || Sbjct 3994 AATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATCGTATCTGATGACTCAAC 4053 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| |||||||| || || |||| || || || ||||||||||| Sbjct 4054 CTCCAAGGTAATCGTCTTCCCTGTCAGCGTCTTGACGAAAATCTGCAT 4101 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| || | ||| || ||| ||| || || || |||||||| || Sbjct 4559 CCGCCACGCAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAG 4618 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| |||||||| ||||| ||||| ||||||| ||| Sbjct 4619 AGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGGGGGG 4678 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || || | | | || || | ||| ||| Sbjct 4679 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGACC 4738 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | || || || ||||||||||| Sbjct 4739 TCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 4785 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||||| ||||| || || || || || || || ||||| || ||||| | || Sbjct 4112 AGCCGCAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGG 4171 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || || || || || ||||| || || | || | ||||||| Sbjct 4172 CCATCCTCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 4231 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || ||| | | | || |||| ||||||||||| || Sbjct 4232 TTGTCCTGGATTTTAGACTTCACATTGTCAATCGTGTCCGACGACTCCACCTCCAGGGTG 4291 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| | || ||||| ||||||||||| Sbjct 4292 ATCGTCTTGCCCGTAAGCGTCTTTACGAAAATCTGCAT 4329 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||||| ||||| || ||||| ||| || ||||| ||||| || || || | || Sbjct 4340 AGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTCCGT 4399 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || ||||| ||||| || || | || | |||||| Sbjct 4400 CCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGGATACCCTCC 4459 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | | || |||| ||| ||||||| || Sbjct 4460 TTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCCGACGACTCGACCTCCAGAGTG 4519 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 4520 ATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 4557 >seq1920 Length=25525 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | ||||| | ||||| || || |||||||| || || || |||||||| | Sbjct 16717 CGCCACCACGGAGCCGTAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGG 16776 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | ||| | || | || || | |||||| ||||| || |||| ||||| || || | | Sbjct 16777 AGAGAGTCCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCG 16836 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC-CTCC 48716 | | |||||||||||| ||||| || ||| | | || || | || ||| Sbjct 16837 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTC-GCTGCTCTCG 16895 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | ||||| || || ||||| | ||||| || || |||||||| Sbjct 16896 ACCTCAAGGGTAATTGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 16945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380925125126901