Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2494 244 2e-59
seq2400 134 3e-26
>seq2494
Length=11727
Score = 244 bits (270), Expect = 2e-59
Identities = 909/1419 (64%), Gaps = 58/1419 (4%)
Strand=Plus/Minus
Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124
||| | ||||| ||| || ||| | || | || |||| | || | ||| || ||
Sbjct 3133 CATGTTGTCCGACCACAGCCCCATATCAACGAGATCCTTCAGCAGCCACGGGTTGACAAC 3074
Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184
|| || || |||| ||||| | | | ||| | ||| || ||| |||| |||| ||
Sbjct 3073 CTGAAACTCGCCCGCCAGCACACGGCGCGAGTAGATGTTGGACGTGTACGGCTCGAAGCA 3014
Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244
|||||||||||||||||||| | ||| || || |||||||| ||||||| ||||||
Sbjct 3013 TTCGTTGTTGCCCAGGATCTGCGACGTCGACGCTGTTGGCATGGGGGCCACCAACAGACT 2954
Query 221245 GTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACAGTGTCCTCC 221304
|||||| | ||| ||||| | | |||| || |||||| ||
Sbjct 2953 GTTGCGGACGCCGTGCTCCTTGATCTTCAGACGGAGCGAGTCCCAGTCCCA--------- 2903
Query 221305 CAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACACCGGACT 221364
|||||| | |||||| |||
Sbjct 2902 CAGGTCAGACGGCTTCACGTCCCACATGTCGGGCTGCAGAATTCCCTGAGACACAGGAGA 2843
Query 221365 CCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGC 221424
|| || |||| | | |||| || | | | |||| || |||| ||| || || ||
Sbjct 2842 GCCCTCATACGTCGCATAGGTGCCCTCAATCTGGGCCAGGTCGCACGACGCAGTGAGAGC 2783
Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGGAGAAGTGA 221483
||||||||||||||||||||||| ||||||||| || | | |||||||| || |
Sbjct 2782 GGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTGAGCTCCCGT-GCCTCGGGCGACTCAA 2724
Query 221484 AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543
||||||| |||||| | | || | || ||||| ||||| || || | ||| || || |
Sbjct 2723 AGGGCATGCGCAGCGCCAGGAAAGCATCTGCCAGCCCCTGCACACCCAAACCAATAGGAC 2664
Query 221544 TGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGAT 221603
||| | | ||||| | || || |||||||| || ||||||| || |
Sbjct 2663 GGTGGCGCATGTTGCTGTTCTCGGCCTCCGGCACGGGGTAGTAGTTGACATC------AA 2610
Query 221604 TGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCA 221663
|| || ||||||| || ||| || || || | | || ||| | || | |
Sbjct 2609 TGATGCGGTTCAGGTTGCGGAC---AAGCAGCTGTGCAACCTCGTGGAGCTT---CTTGA 2556
Query 221664 ACTCG-CCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTA 221722
| ||| || | |||| | | || ||||||| || || | | || |||||
Sbjct 2555 AGTCGTACGTC-TCGTTGTTGTAGTCAACAAAAGACGGCAGTGCTAGGGAAGCTAGGTTG 2497
Query 221723 CACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAGAGGTTGCTGC 221780
||||| || ||||| ||| | || | |||| | ||||| || || | |||| ||
Sbjct 2496 CACACAGCAACCTCATCC--GGTGCACTGTACTCCACAATCTCCGTGCACAAGTTGGAGC 2439
Query 221781 ACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAG-CGTCCTTGTAGAGC 221839
|||||| || |||| || || || |||||| || ||| |||||||||||||
Sbjct 2438 TGCGGATGGTGCCTAGGTTCTTCTGGTTGCTCTTGCGGTT-ACAGTGGTCCTTGTAGAGC 2380
Query 221840 ATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG-TTCTCTGGC 221898
|| || ||| ||| |||||| ||||||| | |||| || |||||| |||| |||
Sbjct 2379 ATGAACGGATTGCCCGTCTCCGTCTGAGCCTCGAGAACTGCGTACCAGAGCTTCT-GGGC 2321
Query 221899 GCTCACCGTCCT-----CTTGA-CTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952
| ||| | | | || || | | |||| ||| |||||| || ||
Sbjct 2320 CTTGACCTTTTTGCGGCCACGACCTTCGCGCTCGTACTTCTCATAC-------AGGGC-- 2270
Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012
||||||| || ||||| | || |||| || |||||| | ||| |||||||| |
Sbjct 2269 CTCAAACTCGTCGCCGTAGACGTCCGCCAGACCGGGACACTCGTTGGGGCACATCAGCGT 2210
Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072
||| | ||| | | |||| || |||||| || || |||||||| |||||| | ||
Sbjct 2209 CCACTCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCAGGGATCCAGAGCGCCAGGAA 2150
Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132
||||| | | || ||||||| ||| | |||||| | ||| || | ||||||||
Sbjct 2149 CAGATCGCGAGCACGAATCTCCTCCTTGCCATGGTTTTTGCGCAGGTCAAGGAACTCAAA 2090
Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192
| ||||| ||||| ||||| || |||| | | |||||| || |||||||| || ||
Sbjct 2089 GACATCAGCATGCCAAGGCTCTAGGTAGATGCAGAAAGCGCCCGGGCGCTTGTTTCCGCC 2030
Query 222193 CTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252
||| ||||| | || |||| ||| || || | || | | || |||||
Sbjct 2029 CTGGTCCACATAGCGAGCCGTGTTGTTGTAGACACGGAGCATAGGGATGATGCCATTGGA 1970
Query 222253 TCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC----A 222308
||||| ||||| |||||| | ||| |||| || ||| || ||| |
Sbjct 1969 CGTGCCGTTTGTGCCGGCAATGTAGGAGCCGGTAGCCC---GGATAC-GGTGGACGTTGA 1914
Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368
||| || ||||| || || ||||||||||| ||| ||||||| ||||| ||| |
Sbjct 1913 GGCCAATGCCACCAGCCGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATAC 1854
Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG-ATTTGGTG 222427
|||| || ||| ||||| | || || || || || || ||||| || | | ||||
Sbjct 1853 CCTCAATGCTGTCATCCTTTATGTCCACAAGGAAGCAGGATGACATTTGGGCCTGTGGT- 1795
Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAG 222466
| | |||||| || || || || ||| || || |||
Sbjct 1794 GTGCCGGCGTTGAAGAGTGTCGGCGAGGCATGCGTGAAG 1756
>seq2400
Length=47555
Score = 134 bits (148), Expect = 3e-26
Identities = 325/495 (66%), Gaps = 17/495 (3%)
Strand=Plus/Plus
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTAGCCTT 25892
||||| | ||||||||| ||| | | | | | || |||| |||| ||||| || ||
Sbjct 7453 TGGGCTCTCAAGTGGATCT-CAGACCGCGAGTCCACCTTTGCTCAGCGCCTGGTCGCTTT 7511
Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952
||| ||||||||||||||||| ||||||||| | || | ||||||||||||| ||| |
Sbjct 7512 TGCCGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTCTCTTCCATCTTCTGGCTGAAGAA 7571
Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012
| || ||||| || ||| ||| ||||||||||| || | |||||||| ||
Sbjct 7572 GCGCGGCCTGATGCCTGGCCTGACCTTCTCCAACGAGCTTATTTCTCGTGACGAGGGCCT 7631
Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC---- 26068
|||| || || || |||||||| | | | || || | |||| | |
Sbjct 7632 GCACACCGACTTCGCTTGCCTGCTGTTCTC---TCATCTG----AAGAACCGCCCCAGCA 7684
Query 26069 AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128
| |||| || | || ||| || ||||| |||| ||| ||||||| |
Sbjct 7685 AGGAGATGATCCAGGAGATAATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTCACCG 7744
Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188
| ||||||||| || |||||||| || ||||||||||
Sbjct 7745 AGGCCCTTCCCTGCGCTCTGCTCGGCATGAACTCCACACTCATGAAGCAGTACATTGAGT 7804
Query 26189 ATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAA 26246
|| ||||||| || ||| |||| || || | | | ||| || | | ||
Sbjct 7805 TCGTTGCCGACCGCCTTCTGGTTGCC--CTCGGCAATGATAAGGTGTACCGTTCCACCAA 7862
Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306
||| |||||||| ||||| ||||| || ||| || |||||||||||||| || ||| |
Sbjct 7863 CCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCG 7922
Query 26307 GGTCGGCGACTATCA 26321
||||| ||||| ||
Sbjct 7923 TGTCGGTGACTACCA 7937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928813602425280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |