Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq2494 156 4e-33
seq2379 105 6e-18
seq1920 98.7 9e-16
>seq2494
Length=11727
Score = 156 bits (172), Expect = 4e-33
Identities = 678/1050 (65%), Gaps = 57/1050 (5%)
Strand=Plus/Minus
Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567
|||||||| || || |||| || || || ||| |||||| ||| | ||||| ||
Sbjct 3075 ACCTGAAACTCGCCCGCCAGCACACGGCGCGAGTAGATGTTGGACGTGTACGGCTCGAAG 3016
Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627
|||||||||| ||||| ||||| | ||| | ||| || |||||| |||||||| |||
Sbjct 3015 CATTCGTTGTTGCCCAGGATCTGCGACGTCGACGCTGTTGGCATGGGGGCCACCAACAGA 2956
Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTT--GAGCGACGACCAGTCCCACAAAT 138685
|| || | ||||| |||||| ||| |||||| ||||||||||| |
Sbjct 2955 CTGTTGCGGACGCCGTGCTCCTTGATC--TTCAGACGGAGCGAGTCCCAGTCCCACAGGT 2898
Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745
| || || || |||||| ||| ||| | |||||| | | ||| ||| |
Sbjct 2897 CAGACGGCTTCACGTCCCACATGTCGGGCTGCAGAATTCCCTGAGACACAGGAGAGCCCT 2838
Query 138746 CGTACGAATCGTATACA---CCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCAC 138802
| |||| ||| ||| || | ||| | |||| ||| ||| ||| ||
Sbjct 2837 CATACG--TCGCATAGGTGCCCTCAATCTGG-GCCAGGTCGCACGACGCAGTGAGAGCGG 2781
Query 138803 CATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACG 138862
| | ||| || || || || |||| |||||| || ||||||| ||| | |
Sbjct 2780 CGTGGTAGATGGTCTCAAAGATTTGCTTGTTGAGCTCCCGTGCCTCGGGCGACTCAAAGG 2721
Query 138863 GCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922
||||||| ||| | ||| || || |||||||| ||||| |||| || | ||| || |
Sbjct 2720 GCATGCGCAGCGCCAGGAAAGCATCTGCCAGCCCCTGCACACCCAAACCAATAGGACGGT 2661
Query 138923 GGCGCAGATTTGACGCTTTTG-CGGCTTCG---ATAGGATAATAGTTTACATCGATGATT 138978
|||||| || ||| || |||| || | || || ||||| ||||| |||||
Sbjct 2660 GGCGCATGTT----GCTGTTCTCGGCCTCCGGCACGGGGTAGTAGTTGACATCAATGATG 2605
Query 138979 TTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCT--TTAATCGT-TCAAAATCGTAT 139035
||| | || || || | || || || | | || | | | | | || |||||
Sbjct 2604 CGGTTCAGGTTGCGGACAAGCAGCT--GT-GCAACCTCGTGGAGCTTCTTGAAGTCGTAC 2548
Query 139036 GTGCCCCCGTTGTCGTCGACGAC-GTCGACAAATTTGTTGACACAAATCGAGGCTATGTT 139094
|| | ||||| ||| || | | || || || | | || |||| |||
Sbjct 2547 GTCTCGTTGTTGTAGTCAACAAAAGACGGCAG---TGCT-------AGGGAAGCTAGGTT 2498
Query 139095 GCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACA 139154
|||||| || || || || || | ||||| || ||||| || | ||||| || |
Sbjct 2497 GCACACAGCAACCTCATCCGGTGCACTGTACTCCACAATCTCCGTGCACAAGTTGGAGCT 2438
Query 139155 CTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCAT 139214
||| || |||| || | || ||||| || |||||||| || ||||| |||||
Sbjct 2437 GCGGATGGTGCCTAGGTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTCCTTGTAGAGCAT 2378
Query 139215 ATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCC--CTAG-- 139270
|||| |||| || ||| || | ||| | || | | || || | || |
Sbjct 2377 GAACGGATTGCCCGTCTCCGTCTGAGCCTCGAGAAC---TGCGTACCAGAGCTTCTGGGC 2321
Query 139271 CTTG---TATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGA 139327
|||| | |||| || | | | |||||||||||||| || || || | || |
Sbjct 2320 CTTGACCTTTTTGCGGCC----ACGACCTTCGCGCTCGTACTTCTCATACAGGGCCTCAA 2265
Query 139328 A-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCAT 139386
| |||| | |||||| |||| | ||| || |||||| || || ||||| |||| |||
Sbjct 2264 ACTCGT-CGCCGTAGACGTCCGCCAGACCGGGACACTCGTTGGGGCACATCAGCGTCCAC 2206
Query 139387 ACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAA 139446
|||||||| || || ||| ||||||||||||| || ||||| | || | | || |
Sbjct 2205 TCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCAGGGATCCAGAGCGCCAGGAACAGA 2146
Query 139447 TCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTT---CATGTTAAGGAAATCAAAA 139503
||||| || | || ||| ||||| | ||| || || |||||| |||||
Sbjct 2145 TCGCGAGCACGAATCTCCTCC-TTGCCATGGT--TTTTGCGCAGGTCAAGGAACTCAAAG 2089
Query 139504 ACGTCAGCGTGCCATGGTTCCAGATAGATG 139533
|| ||||| ||||| || || || ||||||
Sbjct 2088 ACATCAGCATGCCAAGGCTCTAGGTAGATG 2059
>seq2379
Length=13478
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || ||||| || || || || || || || || || || | |
Sbjct 4557 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCG 4498
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || ||||| ||
Sbjct 4497 GACACCATCGATAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 4438
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||| || || || || ||||| |||||| | | | | || || || |||
Sbjct 4437 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGACGGACCCTTTCGGACTACAAC 4378
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||| ||||| ||||| || ||| ||||| |||| | ||||| |||
Sbjct 4377 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGGCTCCGCGGTGGC 4330
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || ||||| || || || || || || || || || || | |
Sbjct 4329 ATGCAGATTTTCGTAAAGACGCTTACGGGCAAGACGATCACCCTGGAGGTGGAGTCGTCG 4270
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || || ||||| ||||| || || || || || || ||
Sbjct 4269 GACACGATTGACAATGTGAAGTCTAAAATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 4210
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | ||||| || || || ||| |||||||| | | | || || || |||
Sbjct 4209 CAGCGCCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACGCTATCGGACTACAAC 4150
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| || ||||||||||| || ||| ||||| ||||
Sbjct 4149 ATCCAGAAGGAATCGACTCTTCACCTGGTGCTGCG 4115
>seq1920
Length=25525
Score = 98.7 bits (108), Expect = 9e-16
Identities = 161/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| || || ||||| || ||||| || || || || || |
Sbjct 16945 ATGCAGATCTTCGTGAAAACCCTCACGGGTAAGACAATTACCCTTGAGGTCGAGAGCAGC 16886
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || || || ||
Sbjct 16885 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 16826
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||| ||||| || ||||| || ||| | | | || ||||| |||
Sbjct 16825 CAGCGCTTGATCTTCGCCGGCAAGCAGCTAGAAGATGGACGGACTCTCTCCGATTACAAC 16766
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935
|| || ||||| || || ||| ||||| | || | || || |||| ||
Sbjct 16765 ATCCAGAAGGAGAGCACTCTCCACCTGGTGCTACGGCTCCGTGGTGGCGCAA 16714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449882489064360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |