Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq2379 134 3e-26
seq1979 109 1e-18
>seq2379
Length=13478
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || ||| || || | |||||| || ||||| ||||| ||||| || || ||
Sbjct 3875 CCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGAG 3934
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | ||||| || || || || || ||||| || || | || || ||||| ||
Sbjct 3935 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAAATGAGCCGCTGCTGGTCTGGGGGA 3994
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || ||||| || |||||||| | || || || ||||||||||| | || ||
Sbjct 3995 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATCGTATCTGATGACTCAACC 4054
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || |||||||| ||||||| |||||| || || ||||||||
Sbjct 4055 TCCAAGGTAATCGTCTTCCCTGTCAGCGTCTTGACGAAAATCTGCAT 4101
Score = 122 bits (134), Expect = 2e-22
Identities = 166/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || |||||| || | ||||| || || || ||||| || || ||||| |
Sbjct 4557 TACCGCCACGCAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCGG 4616
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | ||||| || || || ||||| ||||| || || | || ||||| || |
Sbjct 4617 AGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGGGG 4676
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || |||||||| | || || || || || |||||| || || |
Sbjct 4677 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGA 4736
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813
| || | || || ||||||||||| | ||||| || || |||||||| ||
Sbjct 4737 CCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCATGAT 4788
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || | ||| ||||| ||||| ||||| || || || || ||||| | | ||
Sbjct 4115 CGCAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGGCCA 4174
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || | || || ||||| ||||| || | || || ||||| || || || |||||
Sbjct 4175 TCCTCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTG 4234
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || || || | || ||||| |||||||| || | || || |||| || |||
Sbjct 4235 TCCTGGATTTTAGACTTCACATTGTCAATCGTGTCCGACGACTCCACCTCCAGGGTGATC 4294
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || | ||||||||| || ||||||||
Sbjct 4295 GTCTTGCCCGTAAGCGTCTTTACGAAAATCTGCAT 4329
>seq1979
Length=23555
Score = 109 bits (120), Expect = 1e-18
Identities = 156/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || || || || | ||||||||| || || ||||| ||||| || ||||
Sbjct 2773 TACCACCACGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAG 2832
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | ||||| || || || || ||||||||||| || | || || || || |
Sbjct 2833 ACAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCG 2892
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || || ||||| | || ||||| || ||||| || | || |
Sbjct 2893 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGA 2952
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801
| ||||| || || |||||||| || | ||||| || ||
Sbjct 2953 CCTCCAAGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAA 2992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981793398450893
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |