Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2379 134 3e-26 seq1979 109 1e-18 >seq2379 Length=13478 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | |||||| || ||||| ||||| ||||| || || || Sbjct 3875 CCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGAG 3934 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || ||||| || || | || || ||||| || Sbjct 3935 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAAATGAGCCGCTGCTGGTCTGGGGGA 3994 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || |||||||| | || || || ||||||||||| | || || Sbjct 3995 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATCGTATCTGATGACTCAACC 4054 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||||||| ||||||| |||||| || || |||||||| Sbjct 4055 TCCAAGGTAATCGTCTTCCCTGTCAGCGTCTTGACGAAAATCTGCAT 4101 Score = 122 bits (134), Expect = 2e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || | ||||| || || || ||||| || || ||||| | Sbjct 4557 TACCGCCACGCAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCGG 4616 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || ||||| ||||| || || | || ||||| || | Sbjct 4617 AGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGGGG 4676 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| | || || || || || |||||| || || | Sbjct 4677 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGA 4736 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 | || | || || ||||||||||| | ||||| || || |||||||| || Sbjct 4737 CCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCATGAT 4788 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||| ||||| ||||| ||||| || || || || ||||| | | || Sbjct 4115 CGCAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGGCCA 4174 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | || || ||||| ||||| || | || || ||||| || || || ||||| Sbjct 4175 TCCTCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTG 4234 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || | || ||||| |||||||| || | || || |||| || ||| Sbjct 4235 TCCTGGATTTTAGACTTCACATTGTCAATCGTGTCCGACGACTCCACCTCCAGGGTGATC 4294 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||||||| || |||||||| Sbjct 4295 GTCTTGCCCGTAAGCGTCTTTACGAAAATCTGCAT 4329 >seq1979 Length=23555 Score = 109 bits (120), Expect = 1e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | ||||||||| || || ||||| ||||| || |||| Sbjct 2773 TACCACCACGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAG 2832 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || || ||||||||||| || | || || || || | Sbjct 2833 ACAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCG 2892 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| | || ||||| || ||||| || | || | Sbjct 2893 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGA 2952 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 | ||||| || || |||||||| || | ||||| || || Sbjct 2953 CCTCCAAGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAA 2992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981793398450893