Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq1920 125 6e-24
seq2379 109 5e-19
seq1979 100 3e-16
>seq1920
Length=25525
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | || | ||||| || | || |||||||| || |||||||||||||
Sbjct 16719 CCACCACGGAGCCGTAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAG 16778
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || || |||||||| || || || ||||| ||||||||||| | ||
Sbjct 16779 AGAGTCCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 16838
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||| | | | | | |||||||| || |||
Sbjct 16839 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTCGACC 16898
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | || || || |||||||| | |||||||| || ||||||||
Sbjct 16899 TCAAGGGTAATTGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 16945
>seq2379
Length=13478
Score = 109 bits (120), Expect = 5e-19
Identities = 141/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || || ||||| || | | ||| || |||| ||||||||||| ||||||||
Sbjct 3911 TCCTTCTGGATATTGTAGTCCGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAA 3970
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|| | |||||||||||| | |||| || |||||||||| ||||| ||||| |||
Sbjct 3971 ATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCA-CGTT 4029
Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | ||| || || || ||||||| || ||||| || || |||| || || ||
Sbjct 4030 GTCAATCGTATCTGATGACTCAACCTCCAAGGTAATCGTCTTCCCTGTCAGCGTCTTGAC 4089
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 4090 GAAAATCTGCAT 4101
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | || || ||||| || | || ||||| || |||||||| || |
Sbjct 4103 CCACCACGGAGCCGCAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAT 4162
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || |||| |||||| || || || || | ||||||||||| | ||
Sbjct 4163 AGCGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGG 4222
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| ||| || ||||| | | | | |||||| ||| ||||||
Sbjct 4223 ATGCCCTCCTTGTCCTGGATTTTAGACTTCACATTGTCAATCGTGTCCGACGACTCCACC 4282
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| |||||||| || ||||| | || || || || ||||||||
Sbjct 4283 TCCAGGGTGATCGTCTTGCCCGTAAGCGTCTTTACGAAAATCTGCAT 4329
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||| || | || || ||||| || | ||| |||||| ||||||||||| || |
Sbjct 4331 CCACCGCGGAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAA 4390
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || || |||||||| || || || |||| ||||||||||| | ||
Sbjct 4391 AGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGG 4450
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||||| |||||| ||| | | | | ||||| ||| || |||
Sbjct 4451 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCCGACGACTCGACC 4510
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||| || || || || ||||||||
Sbjct 4511 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 4557
Score = 89.7 bits (98), Expect = 5e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||||||||||| | || || |||| || |||||||| || |||||
Sbjct 4594 CTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAA 4653
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| |||||||| |||| || | || |||||||||| ||||| ||| | ||
Sbjct 4654 AATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 4712
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | || || || || ||||| | ||||| || || || || | || || |
Sbjct 4713 TGTCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGA 4772
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 4773 CGAAAATCTGCAT 4785
>seq1979
Length=23555
Score = 100 bits (110), Expect = 3e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || ||||| || | || ||| || |||| || |||||||| || |||||
Sbjct 2810 CTCCTTCTGGATATTGTAGTCAGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCAAA 2869
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | || | || |||||||||| |||||| ||| | | |
Sbjct 2870 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 2929
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || || ||||||| ||||| || || ||||| | || |||||
Sbjct 2930 GTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTGCCCGTAAGGGTCTTCAC 2989
Query 35725 AAA 35727
||
Sbjct 2990 GAA 2992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450778458969960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |