Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2072 174 5e-38
seq2379 132 1e-25
seq2129 107 6e-18
seq1979 102 2e-16
>seq2072
Length=20114
Score = 174 bits (192), Expect = 5e-38
Identities = 444/670 (66%), Gaps = 8/670 (1%)
Strand=Plus/Plus
Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324
|| ||||||||||| || |||||| | || || || || | ||| || || || || |||
Sbjct 10509 ATTATTGCAAATGACCAGGGTAACCGCACCACACCGTCTTTCGTGGCCTTCACGGACACT 10568
Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384
||||| |||| |||||| |||| || || || | || || || | || || ||
Sbjct 10569 GAGCGGTTGATCGGTGATGCTGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGTC 10628
Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGATC 349442
|| || || ||||| || ||||| | |||| | || | | | || | ||
Sbjct 10629 TTCGACGCAAAGCGGCTCATTGGCCGTCGTTTCGCCGATGCCGAGGTCCAGG--CCGACA 10686
Query 349443 TAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTG 349502
| || || || ||||| ||| | ||| | ||| |||| || || || || ||||| |
Sbjct 10687 TGAAGCACTTCCCTTTCACTATCGTTG-ACAAG--GGTGGCAAGCCCATCATCGAGGTCG 10743
Query 349503 AATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562
| | || || || | || || || || || || ||||| || ||||| | |
Sbjct 10744 AGTTCAAGGGCGAGAAGAAGCAGTTCACTCCTGAGGAGATTTCCTCCATGGTCCTCACCA 10803
Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622
| ||| || | || || | || | |||| || || | ||||||| || ||||
Sbjct 10804 AGATGCGTGAGACCGCCGAGTCTTACCTTGGTGGCACCGTTAACAATGCTGTCATCACTG 10863
Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682
| || ||||| || || || ||||||| || || || |||||||| || || |
Sbjct 10864 TCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCTACGAAGGATGCTGGTCTGATCGCCG 10923
Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742
| | || || || | || ||||| || || |||||||| || ||||| || || ||||
Sbjct 10924 GCCTCAACGTCCTGCGTATCATTAACGAGCCTACTGCTGCTGCCATTGCCTACGGTCTTG 10983
Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802
| || | | || || || | || || || ||| | |||||||||||||| |
Sbjct 10984 ACAAGAAGGTCGAGGGCGAGCGCAACGTGCTGATCTTCGATCTGGGTGGTGGTACTTTCG 11043
Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862
|||| || || || || |||| ||||| || || || || || | || |||||||| |
Sbjct 11044 ATGTGTCTCTGCTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCTGGTGACA 11103
Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922
| || || ||||| || || || || || || || ||| || || ||||| || || |
Sbjct 11104 CTCACCTGGGTGGTGAGGACTTCGACAACCGGCTGGTTAACCACTTCGTTAACGAGTTCA 11163
Query 349923 AGCGTCAAGC 349932
|||| |||||
Sbjct 11164 AGCG-CAAGC 11172
>seq2379
Length=13478
Score = 132 bits (146), Expect = 1e-25
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || |||||||| || || || || || || || ||
Sbjct 4099 CATACCACCACGGAGCCGCAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTC 4158
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|||| || || ||||| || | || || ||||| ||||| || || ||||| || ||
Sbjct 4159 CGATAGCGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGG 4218
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| ||||||| || ||||| ||||||| || || | ||
Sbjct 4219 CGGGATGCCCTCCTTGTCCTGGATTTTAGACTTCACATTGTCAATCGTGTCCGACGACTC 4278
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| || || || || ||||| |||||||||||
Sbjct 4279 CACCTCCAGGGTGATCGTCTTGCCCGTAAGCGTCTTTACGAAAATCTGCAT 4329
Score = 123 bits (136), Expect = 8e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||| ||||| | | || || ||||| || || ||||| || || || || |||||
Sbjct 4555 CATACCGCCACGCAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATC 4614
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || ||||| ||||| || ||||| |||||||| ||
Sbjct 4615 GGAGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGG 4674
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || |||||||| || | || || || || || | |||||| | ||
Sbjct 4675 GGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTC 4734
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| || || || || || || |||||||||||
Sbjct 4735 GACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 4785
Score = 113 bits (124), Expect = 1e-19
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||||| || ||||| | | || || || || || || || || || || ||||| |
Sbjct 3867 TTTACTGGCCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATATTGT 3926
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || || || || || || ||||| || || || ||||| |
Sbjct 3927 AGTCCGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAAATGAGCCGCTGCTGGT 3986
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| || || || |||||||| || | || || || ||||||| ||| ||||
Sbjct 3987 CTGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATCGTATCTGATG 4046
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | |||| ||||| || || || || || || |||||||||||
Sbjct 4047 ACTCAACCTCCAAGGTAATCGTCTTCCCTGTCAGCGTCTTGACGAAAATCTGCAT 4101
>seq2129
Length=18377
Score = 107 bits (118), Expect = 6e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 378220 AGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACA 378279
|||||||| ||| || || || | ||| || || ||||||||||| | ||| ||
Sbjct 3330 AGTCGTCGCTGAATGTATCCCGTCTCGGCAGTCTTCACCGCAGTATCAATGAGACCCTCA 3389
Query 378280 CGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTC 378339
|||||| |||| || |||||||| || ||||| |||||||| |||| | |||| ||
Sbjct 3390 CGACCAGCCATGGCGTGGAAGAAGAACTCAGTGGGAGTAAGGCCACGCAGGTATGAGTTC 3449
Query 378340 TCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGA 378399
|||| ||| || | || | || || | |||| || || ||||||||| || ||
Sbjct 3450 TCAACAAAGCCACGAGCCTCGGGAGAGTAGTCATCCTTGGTGAAATGAGGTAGAGTGCGG 3509
Query 378400 TTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGACC 378446
| || || ||| | ||||| || | || || ||| |||| |||||
Sbjct 3510 TACTTGAATCCAAAGGGAATACGCCTGCCCTCGACAATCTGCTGACC 3556
>seq1979
Length=23555
Score = 102 bits (112), Expect = 2e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567
||||||||||| | | || || || || ||||| ||||| || || ||||| || |||
Sbjct 2772 ATACCACCACGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCA 2831
Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627
|| | || || || || || || || || ||||||||||| || || ||||| || ||
Sbjct 2832 GACAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGC 2891
Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687
|| || || || || ||||| || || | || ||||| || |||| || || | ||
Sbjct 2892 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCG 2951
Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
|| || | || | ||||| || || || || || || ||
Sbjct 2952 ACCTCCAAGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAA 2992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515202234052661
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |