Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2072 174 5e-38 seq2379 132 1e-25 seq2129 107 6e-18 seq1979 102 2e-16 >seq2072 Length=20114 Score = 174 bits (192), Expect = 5e-38 Identities = 444/670 (66%), Gaps = 8/670 (1%) Strand=Plus/Plus Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||||||||| || |||||| | || || || || | ||| || || || || ||| Sbjct 10509 ATTATTGCAAATGACCAGGGTAACCGCACCACACCGTCTTTCGTGGCCTTCACGGACACT 10568 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||||| |||| |||||| |||| || || || | || || || | || || || Sbjct 10569 GAGCGGTTGATCGGTGATGCTGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGTC 10628 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGATC 349442 || || || ||||| || ||||| | |||| | || | | | || | || Sbjct 10629 TTCGACGCAAAGCGGCTCATTGGCCGTCGTTTCGCCGATGCCGAGGTCCAGG--CCGACA 10686 Query 349443 TAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTG 349502 | || || || ||||| ||| | ||| | ||| |||| || || || || ||||| | Sbjct 10687 TGAAGCACTTCCCTTTCACTATCGTTG-ACAAG--GGTGGCAAGCCCATCATCGAGGTCG 10743 Query 349503 AATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | | || || || | || || || || || || ||||| || ||||| | | Sbjct 10744 AGTTCAAGGGCGAGAAGAAGCAGTTCACTCCTGAGGAGATTTCCTCCATGGTCCTCACCA 10803 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || | || || | || | |||| || || | ||||||| || |||| Sbjct 10804 AGATGCGTGAGACCGCCGAGTCTTACCTTGGTGGCACCGTTAACAATGCTGTCATCACTG 10863 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| || || || ||||||| || || || |||||||| || || | Sbjct 10864 TCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCTACGAAGGATGCTGGTCTGATCGCCG 10923 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || || || | || ||||| || || |||||||| || ||||| || || |||| Sbjct 10924 GCCTCAACGTCCTGCGTATCATTAACGAGCCTACTGCTGCTGCCATTGCCTACGGTCTTG 10983 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | || || || | || || || ||| | |||||||||||||| | Sbjct 10984 ACAAGAAGGTCGAGGGCGAGCGCAACGTGCTGATCTTCGATCTGGGTGGTGGTACTTTCG 11043 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || || |||| ||||| || || || || || | || |||||||| | Sbjct 11044 ATGTGTCTCTGCTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCTGGTGACA 11103 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | || || ||||| || || || || || || || ||| || || ||||| || || | Sbjct 11104 CTCACCTGGGTGGTGAGGACTTCGACAACCGGCTGGTTAACCACTTCGTTAACGAGTTCA 11163 Query 349923 AGCGTCAAGC 349932 |||| ||||| Sbjct 11164 AGCG-CAAGC 11172 >seq2379 Length=13478 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || |||||||| || || || || || || || || Sbjct 4099 CATACCACCACGGAGCCGCAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTC 4158 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 |||| || || ||||| || | || || ||||| ||||| || || ||||| || || Sbjct 4159 CGATAGCGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGG 4218 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| ||||||| || ||||| ||||||| || || | || Sbjct 4219 CGGGATGCCCTCCTTGTCCTGGATTTTAGACTTCACATTGTCAATCGTGTCCGACGACTC 4278 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || ||||| ||||||||||| Sbjct 4279 CACCTCCAGGGTGATCGTCTTGCCCGTAAGCGTCTTTACGAAAATCTGCAT 4329 Score = 123 bits (136), Expect = 8e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || ||||| || || ||||| || || || || ||||| Sbjct 4555 CATACCGCCACGCAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATC 4614 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || ||||| ||||| || ||||| |||||||| || Sbjct 4615 GGAGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGG 4674 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || || || || || | |||||| | || Sbjct 4675 GGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTC 4734 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || ||||||||||| Sbjct 4735 GACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 4785 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| || ||||| | | || || || || || || || || || || ||||| | Sbjct 3867 TTTACTGGCCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATATTGT 3926 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || || || || || ||||| || || || ||||| | Sbjct 3927 AGTCCGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAAATGAGCCGCTGCTGGT 3986 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || |||||||| || | || || || ||||||| ||| |||| Sbjct 3987 CTGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATCGTATCTGATG 4046 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | |||| ||||| || || || || || || ||||||||||| Sbjct 4047 ACTCAACCTCCAAGGTAATCGTCTTCCCTGTCAGCGTCTTGACGAAAATCTGCAT 4101 >seq2129 Length=18377 Score = 107 bits (118), Expect = 6e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 378220 AGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACA 378279 |||||||| ||| || || || | ||| || || ||||||||||| | ||| || Sbjct 3330 AGTCGTCGCTGAATGTATCCCGTCTCGGCAGTCTTCACCGCAGTATCAATGAGACCCTCA 3389 Query 378280 CGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTC 378339 |||||| |||| || |||||||| || ||||| |||||||| |||| | |||| || Sbjct 3390 CGACCAGCCATGGCGTGGAAGAAGAACTCAGTGGGAGTAAGGCCACGCAGGTATGAGTTC 3449 Query 378340 TCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGA 378399 |||| ||| || | || | || || | |||| || || ||||||||| || || Sbjct 3450 TCAACAAAGCCACGAGCCTCGGGAGAGTAGTCATCCTTGGTGAAATGAGGTAGAGTGCGG 3509 Query 378400 TTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGACC 378446 | || || ||| | ||||| || | || || ||| |||| ||||| Sbjct 3510 TACTTGAATCCAAAGGGAATACGCCTGCCCTCGACAATCTGCTGACC 3556 >seq1979 Length=23555 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || ||||| ||||| || || ||||| || ||| Sbjct 2772 ATACCACCACGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCA 2831 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || ||||||||||| || || ||||| || || Sbjct 2832 GACAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGC 2891 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || | || ||||| || |||| || || | || Sbjct 2892 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCG 2951 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || || | || | ||||| || || || || || || || Sbjct 2952 ACCTCCAAGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAA 2992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515202234052661