Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1920 127 1e-24 seq2379 89.7 3e-13 >seq1920 Length=25525 Score = 127 bits (140), Expect = 1e-24 Identities = 170/235 (72%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || || | ||||| ||||||||||||||||| || ||||| ||||| | Sbjct 16717 CGCCACCACGGAGCCGTAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGG 16776 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || | ||||| || || || ||||| || || || ||||| ||||| |||| Sbjct 16777 AGAGAGTCCGTCCATCTTCTAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCG 16836 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCT 34652 | | ||||||||||| |||||| ||| || ||||| ||||| ||| Sbjct 16837 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATA-----GTGTCGCTGCT 16891 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| || || | ||| || || ||||| || | |||||||| || ||||||||| Sbjct 16892 CTCGACCTCAAGGGTAATTGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCATG 16946 >seq2379 Length=13478 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| || | ||| || ||| |||||| || ||||| ||||| || Sbjct 4559 CCGCCACGCAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAG 4618 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || |||||||| || | |||||| || ||||| || Sbjct 4619 AGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGGGGGG 4678 Query 34600 ACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 4679 ATGCCCTCCTTGTC 4692 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| || ||||| ||||| || ||||| || || || || || || Sbjct 4112 AGCCGCAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGG 4171 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || || || || || | ||||| ||||| ||||| | |||||| Sbjct 4172 CCATCCTCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 4231 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || || | ||| ||||| |||||| |||| ||| Sbjct 4232 TTGTCCTGGAT-TTTAGACTTCACATTGTCAATCGTGTCCGACGACTCCACCTCCAGGGT 4290 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || | ||| || || |||||||||||| Sbjct 4291 GATCGTCTTGCCCGTAAGCGTCTTTACGAAAATCTGCATG 4330 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | ||||| || || || ||||| || || || || || || Sbjct 3874 GCCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGA 3933 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || || ||||| || | ||||| ||||| || || Sbjct 3934 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAAATGAGCCGCTGCTGGTCTGGGGG 3993 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| || | || ||| | ||| || ||| ||| | Sbjct 3994 AATGCCCTCCTTGTC-CTGAATCTTCGACTTCACGTTGTCAATCGTATCTGATGACTCAA 4052 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| ||||| || || || | ||| || || ||||||||||| Sbjct 4053 CCTCCAAGGTAATCGTCTTCCCTGTCAGCGTCTTGACGAAAATCTGCAT 4101 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| || || || |||||| |||||||| || || ||||| || || Sbjct 4340 AGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTCCGT 4399 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || | ||||| ||||| || || | |||||| Sbjct 4400 CCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGGATACCCTCC 4459 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| || || ||||| ||| || |||| || Sbjct 4460 TTGTCCTGGATC-TTGGACTTGACGTTATCGATGGTGTCCGACGACTCGACCTCCAGAGT 4518 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||| || || || |||||||| Sbjct 4519 GATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 4557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719293294071