Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq2379 91.5 1e-13
seq1920 91.5 1e-13
>seq2379
Length=13478
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || ||||| ||| || || || || || || | ||| || ||| | || ||
Sbjct 4348 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTCCGTCCATCCTC 4407
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
|||||| ||||| || || || || ||||||||||||| || | | ||| ||||||
Sbjct 4408 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTG 4467
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || |||| | | | || || |||||| || |||| ||||| | ||
Sbjct 4468 GATCTTGGACTTGACGTTATCGATGGTGTCCGACGACTCGACCTCCAGAGTGATGGTCTT 4527
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| |||||||| || || ||||| |||||
Sbjct 4528 GCCAGTCAGCGTCTTGACGAAGATCTGCAT 4557
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || ||||| || || || ||||| || || | || || || |||| ||
Sbjct 3892 CACCAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGAGAGGGTGCGGCCGTCCTC 3951
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||||||||| || || ||||||||||| | ||| | || ||| ||||||
Sbjct 3952 CAGCTGCTTGCCCGCAAAAATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 4011
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| ||| || | ||| | | | |||||| ||||| || |||| || || | |
Sbjct 4012 AATCTTCGACTTCA-CGTTGTCAATCGTATCTGATGACTCAACCTCCAAGGTAATCGTCT 4070
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || |||||||| || || || || |||||
Sbjct 4071 TCCCTGTCAGCGTCTTGACGAAAATCTGCAT 4101
>seq1920
Length=25525
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|||| ||||| || || |||||||| || || || || ||||||| || || ||| |
Sbjct 16731 CGTAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGAGTCCGTCCA 16790
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| || ||||| ||||| || || || | ||||||||||| | || | || ||| |||
Sbjct 16791 TCTTCTAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 16850
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
||| ||| || |||| | | | || ||||| ||| || || | || ||
Sbjct 16851 TCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTCGACCTCAAGGGTAATT 16910
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || ||||| || ||||| || ||||| |||||
Sbjct 16911 GTCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 16945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429531533321231
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |