Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12- 22] 2,687 sequences; 28,556,450 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1920 131 4e-25 seq2379 111 4e-19 seq1979 86.0 1e-11 >seq1920 Length=25525 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| ||| || |||||||||||||||| | ||| | |||||| Sbjct 16734 AGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGAGTCCGTCCATCT 16793 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| || ||||||||||| | | ||||||||| | || ||| || ||||| || Sbjct 16794 TCTAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 16853 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | |||| ||||| || ||||| ||||| || Sbjct 16854 TGGATCTTGGACTTGACATTGTCGATAGTGTCGCTGCTCTCGACCTCAAGGGTAATTGTC 16913 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||||| |||||| Sbjct 16914 TTACCCGTGAGGGTTTTCACGAAGATCTGCAT 16945 >seq2379 Length=13478 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||| || |||||||||||||||| | || | || || Sbjct 4574 AGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGGCCGTCC 4633 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| || || || | |||||| |||| | ||| || ||||| | Sbjct 4634 TCGAGCTGCTTT--CCGGCAAAAATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGT 4691 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || ||||| | || | | | || ||| ||| || || || || || | Sbjct 4692 CCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGACCTCGAGGGTGATGG 4751 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||| ||||| | |||||| Sbjct 4752 TCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 4785 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || |||||||| || || || ||||||||||| || | || || | ||||| Sbjct 4118 AGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGGCCATCC 4177 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || ||||||||||| | ||||||||| | || ||| || ||||| || Sbjct 4178 TCCAACTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 4237 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || ||| | || | |||| || ||| || || || || || || Sbjct 4238 TGGATTTTAGACTTCACATTGTCAATCGTGTCCGACGACTCCACCTCCAGGGTGATCGTC 4297 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| ||||| | |||||| Sbjct 4298 TTGCCCGTAAGCGTCTTTACGAAAATCTGCAT 4329 >seq1979 Length=23555 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || ||||| ||||| || ||||| ||||| || | | || | || || Sbjct 2789 GAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGGCCGTC 2848 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||||||||| | || ||| || ||||| || Sbjct 2849 CTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 2908 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | |||| || ||| || || | || || || Sbjct 2909 CTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGT 2968 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAG 152096 |||||||| || |||||||||||| Sbjct 2969 CTTGCCCGTAAGGGTCTTCACGAAG 2993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153781077194977