Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptographium_20procerum_20[genbank_20GCA_5F000806385.1_202014-12-
22] 2,687 sequences; 28,556,450 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2379 165 2e-35
seq1920 154 4e-32
seq2494 84.2 5e-11
>seq2379
Length=13478
Score = 165 bits (182), Expect = 2e-35
Identities = 160/206 (78%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || |||||||| || || |||||||||||||| || || ||
Sbjct 4782 CAGATTTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCTTCTGAT 4723
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || || ||||| ||||| |||||
Sbjct 4722 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAGCAG 4663
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || |||||||| |||||||| || || | || || ||||||| ||| ||
Sbjct 4662 CGTCTGATTTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACGCTCTCCGATTACAACATC 4603
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || |||||||| ||
Sbjct 4602 CAGAAGGAGTCCACCCTGCATCTCGT 4577
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || ||||| || ||||| || || |||
Sbjct 4554 CAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCGGAC 4495
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 4494 ACCATCGATAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAGCAG 4435
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || ||||| || |||||| |||| ||| | || || ||| |
Sbjct 4434 CGCCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGACGGACCCTTTCGGACTACAACATT 4375
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || ||||| || ||
Sbjct 4374 CAGAAGGAGTCGACGCTGCACCTGGT 4349
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || || || || || ||||||||||| |||||||| || |||
Sbjct 4326 CAGATTTTCGTAAAGACGCTTACGGGCAAGACGATCACCCTGGAGGTGGAGTCGTCGGAC 4267
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || || || |||||||| || || ||||| || ||||||||
Sbjct 4266 ACGATTGACAATGTGAAGTCTAAAATCCAGGACAAGGAGGGCATCCCGCCAGACCAGCAG 4207
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| || || ||| | || ||||| | || || | || || ||| ||
Sbjct 4206 CGCCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACGCTATCGGACTACAACATC 4147
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || || || ||
Sbjct 4146 CAGAAGGAATCGACTCTTCACCTGGT 4121
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || || ||||| || ||||| ||| | ||||| || |||||
Sbjct 4098 CAGATTTTCGTCAAGACGCTGACAGGGAAGACGATTACCTTGGAGGTTGAGTCATCAGAT 4039
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || |||||||||||||| || || || || || ||||||||
Sbjct 4038 ACGATTGACAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 3979
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || || ||||| || || || | || || | || || || ||
Sbjct 3978 CGGCTCATTTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCGGACTACAATATC 3919
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || ||||| || ||
Sbjct 3918 CAGAAGGAATCGACGCTGCACCTGGT 3893
>seq1920
Length=25525
Score = 154 bits (170), Expect = 4e-32
Identities = 147/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||||||||| ||||| || || || || ||||| ||||| || ||| |||
Sbjct 16942 CAGATCTTCGTGAAAACCCTCACGGGTAAGACAATTACCCTTGAGGTCGAGAGCAGCGAC 16883
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 16882 ACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 16823
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| || ||||| ||||||||| ||||||| ||||||| ||| ||
Sbjct 16822 CGCTTGATCTTCGCCGGCAAGCAGCTAGAAGATGGACGGACTCTCTCCGATTACAACATC 16763
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 16762 CAGAAGGA 16755
>seq2494
Length=11727
Score = 84.2 bits (92), Expect = 5e-11
Identities = 181/267 (68%), Gaps = 8/267 (3%)
Strand=Plus/Minus
Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187
||| ||||||||||| |||||| | | || ||||| ||||| || | |||
Sbjct 2422 GTTCTTCTGGTTGCTCTTGCGGTTACAGTGGTCCTTGTAGAGCATGAACGGATTGCCCGT 2363
Query 214188 CTCGACTTGAGCGACAAGAA-TGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGG 214246
||| ||||| | |||| || | | |||||| | |||||||| ||||||||||
Sbjct 2362 CTCCGTCTGAGCCTCGAGAACTGCG-TACCAGAGCTTCTGGGCCTT---GACCTTTTTGC 2307
Query 214247 ---CTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACAT 214303
| | || ||| |||||||| ||||| || | |||||| || |||||||| |
Sbjct 2306 GGCCACGACCTTCGCGCTCGTACTTCTCATACAGGGCCTCAAACTCGTCGCCGTAGACGT 2247
Query 214304 CATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTC 214363
| | ||||||||| |||||||||||| | || |||| | || || | | || |
Sbjct 2246 CCGCCAGACCGGGACACTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCAACCC 2187
Query 214364 TTTTCATGAAAAGGTCGGAAGTCCAGA 214390
|||||||| || || | ||||||
Sbjct 2186 GCTTCATGAACAGATCAGGGATCCAGA 2160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203689758920278
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |