Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq497 98.7 2e-15 seq476 93.3 9e-14 >seq497 Length=111328 Score = 98.7 bits (108), Expect = 2e-15 Identities = 169/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAACGCTGAACTTATG 230472 |||||||| || |||||| | || ||| || || | || ||||| || | || ||| Sbjct 104685 AGGAGTTCCTTACTGACGCCCTGCCTTGT-GCGTTGCTCGGTATGAATGCCAAGCTCATG 104627 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 | ||||||||||| ||||| || ||||| | | | || || || || || ||| Sbjct 104626 TGCCAGTACATCGAGTTCGTTGCAGACCGTCTCCTACTCGCCCTCGGCAAC-AGCAAGCA 104568 Query 230533 -TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591 ||| | | | |||||||| | || |||||| |||||| || || |||||||| Sbjct 104567 CTACCATGCCACTAACCCCTTCGACTTCATGGAGAACATTTCCCTCGCTGGCAAGACCAA 104508 Query 230592 CTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAAGCCCGAAGACAA 230651 |||||| || ||| | ||| ||||||| |||| | ||||||| ||| || || | |||| Sbjct 104507 CTTCTTTGAGAAGAGAGTCGGTGACTACCAGAAGGCTGGTGTCATGGAGGCCCACAACAA 104448 >seq476 Length=133605 Score = 93.3 bits (102), Expect = 9e-14 Identities = 205/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 282483 ATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCACATGACCGTATCTCAGAGAA 282542 || |||| || ||| |||| || ||||||||||| | ||| || ||||| ||||| Sbjct 81033 ATATGAGAACCATCATGATCCTGATCAGTCATGATCATTAGATGCCCATATCTGAGAGAC 80974 Query 282543 GAAGTGTCTTTGTACACTTTACCGGTTTGAAGGCCCA-AAATTTGTTTGAGCGCGGTGAT 282601 ||||| || | || | ||| | ||||| ||||| || | | | ||| Sbjct 80973 TTTGTGTCGACATAATCCTTCTTGTGTTGCAAGCCCAGGAATTTCTTGATGTTCTG-GAT 80915 Query 282602 TTCTTCGTTCTTTGTGATACTTG--CCACAGATGCATCGCGAACGTTCAGCAACTTACCG 282659 ||| | || |||||||| ||| |||| || ||||| |||||||| || | ||| ||| Sbjct 80914 CTCTGCATTTTTTGTGAT--TTGGTCCACTGACGCATCTCGAACGTTGAGAAGCTTTCCG 80857 Query 282660 CGGAGAGGAAAAACACCATATCTCTCGCGACCGACCACGGACAGTCCTGCAATTGCAAGT 282719 || ||||| ||||||||| | ||| || || || | | ||||||| ||||| Sbjct 80856 CGCAGAGGGAAAACACCAAACAAATCGGGATTTACAACAGCACGACCTGCAAGAGCAAGC 80797 Query 282720 GTTGCTGCGGAATCTCCCTCCGTCAAGATGAGAGTACACATCTTACTATGATTTGTGCCC 282779 | || || || || ||||| |||| ||| | ||| ||| || | || ||||| || Sbjct 80796 GGAGCGGCCGAGTCACCCTCAGTCAGGATCAAAGTGCACTTCCAGCCATCCTTTGTACCA 80737 Query 282780 GCC 282782 ||| Sbjct 80736 GCC 80734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057817074227930