Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq13 143 3e-29 seq497 120 4e-22 >seq13 Length=329804 Score = 143 bits (158), Expect = 3e-29 Identities = 473/726 (65%), Gaps = 12/726 (2%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||| || || || | |||| | | ||||| || |||| || ||||| | | Sbjct 256215 TTCAAATTCATCGCCGTAGACATCAGCGAGACCAGGGCACTCATTTGGGCACATGAGAGT 256156 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| |||| ||| | || || ||||| |||||||| |||||||| || || || Sbjct 256155 CCAGGTGCCGTTATCTTGGACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAA 256096 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 || || | || | ||| || ||||| ||||| ||||| ||||| |||| Sbjct 256095 GAGGTCACGGGCACGGACTTCTTCTTTTCCGTGGTTCTTACGGAGATCCAGGAAGGCCAA 256036 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 || ||| | |||||| || || | ||||||| | | || || |||||||| || || Sbjct 256035 AACATCCGCATGCCATGGCTCGAGATATATGGCAAAGGCACCTGGGCGTTTGTTACCACC 255976 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 || || | || || || ||||| || | || | | ||| || | | ||||||||| Sbjct 255975 TTGGTCCACATACCTGGCAGTGTTGTTGAACACGCGGAGCATGGGCACCAGACCATTGGA 255916 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGA 54307 | || ||||| ||| || ||| ||| | || | ||| | ||| | || Sbjct 255915 GGTGCCGTTGGTACCGCTAATGTAGGAGCCAGTTGCTCTGATACGGTGGGCATTCA--GA 255858 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGATGCC 54366 || || || || || | || ||||| | || || ||| || | || || ||||| || Sbjct 255857 CCGATTCCACCAGCGTTCTTGGAGATCATGGCACA-CGTCTTCAGTGTGTCGTAGATACC 255799 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT-TGGTGACGACTAG 54425 || || || |||||| |||| | | || || || | || || ||| | | Sbjct 255798 ATCAATGCTGTCATCCTTCATATCGATGAGGAAGCA-CGAGGCAAGCTGGGCTTGTGGGG 255740 Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 | || ||| | || | ||| ||||| ||||| || || | || | || | | |||| Sbjct 255739 TACCAGCACTGAAGAGGGTTGGAGAGGCGTGTGTGAAGTACTTGTTGGACATCAAGTTGT 255680 Query 54486 ACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 54545 ||||||| || || || || ||| ||||| || || || |||||||| | || Sbjct 255679 ACGTCTCAATTGCACTCTCAATGTCCTCGCCGTGAATACCCACAGCAACACGCATGATCA 255620 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 ||||||| || | |||| ||| ||| | || ||| | |||||| | |||| | Sbjct 255619 TGTGCTGGGGACGTTCAGCGACCTTTCCATCGATACGCAGGAGGTAGGACCTCTCCAGTG 255560 Query 54606 TTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 | |||||||| || || | ||| ||||| || || ||||| | |||| |||| ||||| Sbjct 255559 TCTTAAAACCGAAGTATTGGTAGTTGAAA--TCACGGTCGTAGACAATAGCTGAATTGAG 255502 Query 54664 TTTATC 54669 | ||| Sbjct 255501 CTCATC 255496 >seq497 Length=111328 Score = 120 bits (132), Expect = 4e-22 Identities = 339/518 (65%), Gaps = 12/518 (2%) Strand=Plus/Plus Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 |||||||| || ||||| || | ||| ||||||||||| || ||||| || ||||| ||| Sbjct 104808 TCGTTGGAGAAGGTGAGACCTGCCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCA 104867 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA 24296 ||||| ||||| ||||| || || || || || || || |||||||| || | | Sbjct 104868 AATGAACCAGAGAAGAAGATACCCTCAACGGCGGCGAAAGCAATAAGCCTGCAGGCGAA- 104926 Query 24297 CCGGCGCTG-TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 24350 | |||| || ||| |||||| | |||||| || |||||||| | ||| Sbjct 104927 --TGTGCTGTTCTTGTCGCTGATCCACCTCAAAGCCCAGTCAGCCTTCTTGCGGATGCAA 104984 Query 24351 GGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTA 24410 || || | || || || || ||||| ||| | | | || || | | || || Sbjct 104985 GGAATGTTGTCGATGGCGTTGAAGAGGTAGGTCCTCTGCTTGGGTTCACTGATGTAGGTG 105044 Query 24411 TCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG 24470 || || | ||| || ||||||| || ||||| || || || || ||||||||| Sbjct 105045 TCGATGAGGAGAGAGTATGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAG 105104 Query 24471 AAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTC 24530 || || || ||||| | ||||| || || || || || || | | || || || Sbjct 105105 AAGCACCTGGCCTCTGGGATCTGCACCTCACCACTGAAACGCTCGACAAGGTTCTCGTTG 105164 Query 24531 ACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCT 24590 || || || || ||| || || || || | || || || ||| | ||||| Sbjct 105165 ACGATGCCATCGGAGGCAGCGAAGAAGGCGAGAACGTGGGAGATGAAAAAGCGCTCGTCG 105224 Query 24591 GGTGTTA---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTC 24647 | | | || ||||| || | | ||| || || | ||| | || || | ||| Sbjct 105225 TCATTGAGACGCTTGTTCCAGTCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTC 105284 Query 24648 CAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 || || || ||||||||||| || ||||| | |||||| Sbjct 105285 CAGAAAGAGGCCTCTGCCTTCTTGTACATCTGCCAGAT 105322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717807603280