Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq497 345 4e-90 seq35 122 9e-23 seq246 120 3e-22 seq112 98.7 1e-15 >seq497 Length=111328 Score = 345 bits (382), Expect = 4e-90 Identities = 557/793 (70%), Gaps = 17/793 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| ||||||| | || ||| Sbjct 105322 ATCTGGCAGATGTACAAGAAGGCAGAGGCCTCTTTCTGGACCGCCGAGGAGATCGATCTG 105263 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | ||| | || ||| |||||||| ||||||| Sbjct 105262 TCCAAGGATCTTCACGACTGGAACAAGCGTCTCAATGACGACGAGCGCTTTTTCATCTCC 105203 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| ||||| ||| ||| ||||||||||||||||| || ||||||||| Sbjct 105202 CACGTTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTCAACGAGAACCTTGTCGAGCGT 105143 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||||||| | | ||||| ||||||||||||| || |||||| ||| Sbjct 105142 TTCAGTGGTGAGGTGCAGATCCCAGAGGCCAGGTGCTTCTACGGATTCCAGATCATGATG 105083 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | |||||||||| || || |||||||||||| ||| | | | || Sbjct 105082 GAGAACATCCACTCGGAAACATACTCTCTCCTCATCGACACCTACATCAGTGAACCCAAG 105023 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 ||| | | | || ||||||||||| | || || ||| || ||||||| || Sbjct 105022 CAGAGGACCTACCTCTTCAACGCCATCGACAACATTCCTTGCATCCGCAAGAAGGCTGAC 104963 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| || | |||||| || || | | | |||| | | || | || ||| Sbjct 104962 TGGGCTTTGAGGTGGATCAGCGACAAGAACAGCACATTCGCCTGCAGGCTTATTGCTTTC 104903 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || ||||| ||||| ||||||| || || || ||| |||| || ||||||||||| Sbjct 104902 GCCGCCGTTGAGGGTATCTTCTTCTCTGGTTCATTTGCCTCCATCTTCTGGCTCAAGAAG 104843 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 || ||||||||| | || || || ||| |||||||||||||||| | || ||||| || Sbjct 104842 CGTGGCCTCATGGCAGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGCATG 104783 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGC---AGC--GACCGAGCGCGG 117227 || |||||| ||||| | || ||| || | || ||| |||| ||| | | Sbjct 104782 CACACCGACTTCGCCTGCCTTCTTTTCTCTCACCTCAAGCACAAGCCTGACCAAGCTCTG 104723 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 || ||| ||| || ||| || ||||| || |||||| ||||| || || | Sbjct 104722 GTCGAGTC-----CATCATCGTCGAGGCCGTCGCTATTGAGCAGGAGTTCCTTACTGACG 104668 Query 117288 CGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTT 117345 | ||||| |||||| |||| || | || ||| || | |||| || ||||||||||| Sbjct 104667 CCCTGCCTTGTGCGT-TGCTCGGTATGAA-TGCCAAGCTCATGTGCCAGTACATCGAGTT 104610 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 ||| || ||| | || || |||| || | | | |||||||||| | | | ||||| Sbjct 104609 CGTTGCAGACCGTCTCCTACTCGCCCTCGGCAACAGCAAGCACTACCATGCCACTAACCC 104550 Query 117406 GCTGGACTTTATG 117418 | ||||| ||| Sbjct 104549 CTTCGACTTCATG 104537 >seq35 Length=320448 Score = 122 bits (134), Expect = 9e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 ||||||| |||||||||||| |||| || || | | |||| | | | | ||||| Sbjct 216077 TCACGGGTAAAACCATCACCCTCGAGGTTGAGTCTTCGGACACCATCGACAATGTCAAGT 216136 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| ||||| ||||| |||||||||| || | |||| ||| |||| Sbjct 216137 CCAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCA 216196 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || |||| || |||||| ||||||||||||||||||||| ||| || | Sbjct 216197 AGCAGCTCGAGGACGGTCGTACCCTCTCGGACTACAACATCCAGAAGGAGAGCACCCTTC 216256 Query 40892 ATCTAGTGTTGCGCTTGAGGGGCGG 40916 | || || ||||| || | || || Sbjct 216257 ACCTGGTCCTGCGCCTGCGTGGTGG 216281 >seq246 Length=221927 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || | || Sbjct 103540 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 103481 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| ||||| ||||| | |||||| Sbjct 103480 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 103421 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| ||||| || || || || | ||||||||| |||||||| Sbjct 103420 CAGCGATTGATCTTCGCTGGCAAGCAACTCGAGGATGGTCGCACCCTCTCAGACTACAAT 103361 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 103360 ATCCAGAAGGAGTCCACCCTCCACCTCGT 103332 Score = 116 bits (128), Expect = 4e-21 Identities = 152/206 (74%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || | | Sbjct 103084 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTGGAGAGCTCA 103025 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| ||| || | ||||| || ||||| ||| | ||||| Sbjct 103024 GACACCATCGACAACG-TCAAGTCAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 102966 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 40866 ||| || ||||| | ||| ||||| ||| |||| |||| || ||| ||| |||||| Sbjct 102965 GCAGCGTCTCATTTTCGCAGGCAAGCAGTTGGAGGACGGCAGGACACTGTCA--GACTAC 102908 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||| ||| || || Sbjct 102907 AACATCCAGAAGGAGAGCACTCTCCA 102882 Score = 102 bits (112), Expect = 8e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| |||||||| | || ||||| || | |||| | | | |||| | ||| Sbjct 103746 TCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACG-TAAAG 103688 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| || ||||| || | |||||||| || || |||| || || Sbjct 103687 TCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAGCAGCGTCTTATCTTTGCTGGA 103628 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || || || || |||| |||||||| |||||||||||||||||||||| |||| || Sbjct 103627 AAGCAACTTGAAGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTC 103568 Query 40891 CATCTAGT 40898 || || || Sbjct 103567 CACCTCGT 103560 >seq112 Length=559721 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || | |||| ||| ||||| ||||| || Sbjct 120230 GACAAGGAGGGCATCCCCCCAGACCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAG 120289 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || | || ||||||| |||||||||||||||||||| Sbjct 120290 GATGGCCGTACCCTCAGCGACTACAACATCCAGAAGG 120326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215909037360