Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq246 120 3e-22 seq35 84.2 3e-11 >seq246 Length=221927 Score = 120 bits (132), Expect = 3e-22 Identities = 150/202 (74%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045 |||||||||||| ||||| |||||||| | ||| || || |||| || ||||||||||| Sbjct 103115 TGTGCTCTCCTTCTGAATGTTGTAATCCGACAGGGTACGGCCGTCCTCCAGCTGCTTACC 103174 Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 |||||| || | || ||||||||| | || | || |||||||| ||| ||| || Sbjct 103175 AGCGAAGATCAATCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTTGACTT 103234 Query 43106 GAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161 || ||| | | | ||||| |||| ||||| || | |||||||| || || || | Sbjct 103235 GA-CGTTGTCGATGGTGTCTGAGCTC---TCCACTTCCAGGGTGATGGTCTTTCCGGTGA 103290 Query 43162 GCGTCTTTACAAAGATTTGCAT 43183 | ||||| || ||||| ||||| Sbjct 103291 GGGTCTTGACGAAGATCTGCAT 103312 Score = 118 bits (130), Expect = 1e-21 Identities = 172/239 (72%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||| ||||| || | | | || |||||| || | ||||||||||| || || |||| Sbjct 102850 CCTACTGTCCACCACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGT 102909 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || | ||| |||| |||| || | |||||| || ||||| ||||| |||||||||| Sbjct 102910 AGTCTGACAGTGTCCTGCCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGT 102969 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---G 43124 | | || | || |||||||| ||| ||| |||| ||| | | | ||||| | Sbjct 102970 CTGGGGGAATGCCTTCCTTGTCTTGGATCTTTGACTTGA-CGTTGTCGATGGTGTCTGAG 103028 Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 103029 CTC---TCCACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || | || || || | || || || ||||| |||||||| Sbjct 103349 CTCCTTCTGGATATTGTAGTCTGAGAGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAA 103408 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | | |||||||||| ||| || || | | Sbjct 103409 GATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATT 103468 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || ||||| |||| |||||||| ||||| || || ||||| || Sbjct 103469 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGAC 103528 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 103529 GAAGATCTGCAT 103540 >seq35 Length=320448 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||| || | ||||||||||| || || ||||| || | || || || || Sbjct 216269 CGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCG 216210 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || | ||||||||||| | || | | ||||||| Sbjct 216209 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTG 216150 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || |||| | | | ||||| || || || |||| |||||| Sbjct 216149 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATG 216090 Query 43149 GTTTTGCCCGT 43159 ||||| ||||| Sbjct 216089 GTTTTACCCGT 216079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813947515080