Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13 143 3e-29 seq497 138 1e-27 >seq13 Length=329804 Score = 143 bits (158), Expect = 3e-29 Identities = 453/693 (65%), Gaps = 12/693 (2%) Strand=Plus/Minus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || |||| || ||||| | | ||| |||| ||| | || || ||||| || Sbjct 256182 AGGGCACTCATTTGGGCACATGAGAGTCCAGGTGCCGTTATCTTGGACACGCTTCATGAA 256123 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||| |||||||| || || || || || | | | ||| || ||||| Sbjct 256122 GAGATCTGGAATCCAGAGGGCGTAGAAGAGGTCACGGGCACGGACTTCTTCTTTTCCGTG 256063 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| ||||| ||||| |||| || ||| | |||||| || || | |||||||| Sbjct 256062 GTTCTTACGGAGATCCAGGAAGGCCAAAACATCCGCATGCCATGGCTCGAGATATATGGC 256003 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | || || |||||||| || || || || | || || || ||||| || | || Sbjct 256002 AAAGGCACCTGGGCGTTTGTTACCACCTTGGTCCACATACCTGGCAGTGTTGTTGAACAC 255943 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| || | | ||| || || | || ||||||||| || ||| ||| | Sbjct 255942 GCGGAGCATGGGCACCAGACCATTGGAGGTGCCGTTGGTACCGCTAATGTAGGAGCCAGT 255883 Query 63521 GGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 || | ||| | ||| | |||| ||||| || || | || ||||| | || Sbjct 255882 TGCTCTGATACGGTGGGCATTCA--GACCGATTCCACCAGCGTTCTTGGAGATCATGGCA 255825 Query 63579 CATCGTTTTAAC-GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 || ||| || | ||||| ||||| || || ||||| ||||| |||| | | || || Sbjct 255824 CA-CGTCTTCAGTGTGTCGTAGATACCATCAATGCTGTCATCCTTCATATCGATGAGGAA 255766 Query 63638 ACAGCTAGACATT-TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 || | || || ||| | | || || ||| | || | ||| ||||| ||||| | Sbjct 255765 GCA-CGAGGCAAGCTGGGCTTGTGGGGTACCAGCACTGAAGAGGGTTGGAGAGGCGTGTG 255707 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 | || | || | || | | |||||||||||||| || || || ||| | Sbjct 255706 TGAAGTACTTGTTGGACATCAAGTTGTACGTCTCAATTGCACTCTCAATGTCCTCGCCGT 255647 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 |||| || || || |||||||| | ||||||||| || | |||| | | || | | Sbjct 255646 GAATACCCACAGCAACACGCATGATCATGTGCTGGGGACGTTCAGCGACCTTTCCATCGA 255587 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 63874 | || | |||||| | |||| || |||||||| || || | ||| ||||| || Sbjct 255586 TACGCAGGAGGTAGGACCTCTCCAGTGTCTTAAAACCGAAGTATTGGTAGTTGAAA--TC 255529 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATC 63907 || ||||| | |||| | |||||||||| ||| Sbjct 255528 ACGGTCGTAGACAATAGCTGAATTGAGCTCATC 255496 >seq497 Length=111328 Score = 138 bits (152), Expect = 1e-27 Identities = 368/560 (66%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||||| ||||| || | || | ||||| || || ||||| Sbjct 104766 CAGGCGAAGTCGGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGA 104825 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || | ||| ||||||||||| || ||||| || ||||| || ||||| || || |||||| Sbjct 104826 CCTGCCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAATGAACCAGAGAAGAAG 104885 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG-TCATGT-- 33758 || || || || || || || |||||||| || | | | |||| || ||| Sbjct 104886 ATACCCTCAACGGCGGCGAAAGCAATAAGCCTGCAGGCGAA---TGTGCTGTTCTTGTCG 104942 Query 33759 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 |||||| | |||||| || |||||||| | ||||| || | || ||||| Sbjct 104943 CTGATCCACCTCAAAGCCCAGTCAGCCTTCTTGCGGATGCAAGGAATGTTGTCGATGGCG 105002 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 || ||||| ||| | | | || || | | || || ||||| | ||| || Sbjct 105003 TTGAAGAGGTAGGTCCTCTGCTTGGGTTCACTGATGTAGGTGTCGATGAGGAGAGAGTAT 105062 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 ||||||| || ||||| || || ||||| ||||||||||| || || ||||| | Sbjct 105063 GTTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACCTGGCCTCTGGG 105122 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 |||||||| || || || || || | | || || || || || ||||| ||| Sbjct 105123 ATCTGCACCTCACCACTGAAACGCTCGACAAGGTTCTCGTTGACGATGCCATCGGAGGCA 105182 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTC 34052 || || || || | || || || ||| | ||||| | | | || ||| Sbjct 105183 GCGAAGAAGGCGAGAACGTGGGAGATGAAAAAGCGCTCGTCGTCATTGAGACGCTTGTTC 105242 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 || || | | ||| || || | ||| | || || | ||||| || || ||||||||| Sbjct 105243 CAGTCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAAGAGGCCTCTGCC 105302 Query 34113 TTTTTATACATATTCCAGAT 34132 || || ||||| | |||||| Sbjct 105303 TTCTTGTACATCTGCCAGAT 105322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813577040080