Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13 150 2e-31 seq497 136 5e-27 >seq13 Length=329804 Score = 150 bits (166), Expect = 2e-31 Identities = 456/695 (66%), Gaps = 12/695 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || ||||| || ||||| | | ||| || | ||| | || || ||||| Sbjct 256184 CCAGGGCACTCATTTGGGCACATGAGAGTCCAGGTGCCGTTATCTTGGACACGCTTCATG 256125 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| |||||||| || || || || || | || | || || ||||| Sbjct 256124 AAGAGATCTGGAATCCAGAGGGCGTAGAAGAGGTCACGGGCACGGACTTCTTCTTTTCCG 256065 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| ||||| ||||| |||| || ||| | |||||| || || | |||||| Sbjct 256064 TGGTTCTTACGGAGATCCAGGAAGGCCAAAACATCCGCATGCCATGGCTCGAGATATATG 256005 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || |||||||| || || || || | || || || ||||| || | Sbjct 256004 GCAAAGGCACCTGGGCGTTTGTTACCACCTTGGTCCACATACCTGGCAGTGTTGTTGAAC 255945 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | | ||||||||| | || ||||| ||| || ||| ||| Sbjct 255944 ACGCGGAGCATGGGCACCAGACCATTGGAGGTGCCGTTGGTACCGCTAATGTAGGAGCCA 255885 Query 72274 CTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 | || | ||| || ||| | |||| ||||| || || | || ||||| | | Sbjct 255884 GTTGCTCTGATACGGTGGGCATTCA--GACCGATTCCACCAGCGTTCTTGGAGATCATGG 255827 Query 72332 CGCATCGTTTTAAC-GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 | || ||| || | || || ||||| || || || || |||||| |||| | | || Sbjct 255826 CACA-CGTCTTCAGTGTGTCGTAGATACCATCAATGCTGTCATCCTTCATATCGATGAGG 255768 Query 72391 AAACAGCTAGACATT-TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 || || | || || ||| | || || ||| | || | ||| ||||| ||||| Sbjct 255767 AAGCA-CGAGGCAAGCTGGGCTTGTGGGGTACCAGCACTGAAGAGGGTTGGAGAGGCGTG 255709 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509 || || | || | |||| | |||||||||||||| || || || ||| Sbjct 255708 TGTGAAGTACTTGTTGGACATCAAGTTGTACGTCTCAATTGCACTCTCAATGTCCTCGCC 255649 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATT 72569 || || || || || |||||||| | ||| ||||| || | |||| ||| ||| || Sbjct 255648 GTGAATACCCACAGCAACACGCATGATCATGTGCTGGGGACGTTCAGCGACCTTTCCATC 255589 Query 72570 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAG 72627 || || | |||||| | |||| || |||||||| || || | ||| ||||| Sbjct 255588 GATACGCAGGAGGTAGGACCTCTCCAGTGTCTTAAAACCGAAGTATTGGTAGTTGAAA-- 255531 Query 72628 TCTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662 || || ||||| | |||| | |||||||| | ||| Sbjct 255530 TCACGGTCGTAGACAATAGCTGAATTGAGCTCATC 255496 >seq497 Length=111328 Score = 136 bits (150), Expect = 5e-27 Identities = 368/557 (66%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| ||||| |||||||| | || | |||||||| || ||||| Sbjct 104766 CAGGCGAAGTCGGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGA 104825 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || | ||| ||||||||||| || ||||| || || || |||||||| ||||| |||||| Sbjct 104826 CCTGCCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAATGAACCAGAGAAGAAG 104885 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCT-CTCTC-CATAACCGGCAC-TGTCATGT 42241 || || || || || || || |||||||| || | | || | | | |||| Sbjct 104886 ATACCCTCAACGGCGGCGAAAGCAATAAGCCTGCAGGCGAATGTGCTGTTCTTGTCGCTG 104945 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||| | |||||| || |||||||| | ||||| || | || ||||| || Sbjct 104946 ATCCACCTCAAAGCCCAGTCAGCCTTCTTGCGGATGCAAGGAATGTTGTCGATGGCGTTG 105005 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 ||||| ||| | | | || || | | || || ||||| | ||| || || Sbjct 105006 AAGAGGTAGGTCCTCTGCTTGGGTTCACTGATGTAGGTGTCGATGAGGAGAGAGTATGTT 105065 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || ||||| ||||||||||| || |||||||| | | | Sbjct 105066 TCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACCTGGCCTCTGGGATC 105125 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || || || || || | | || ||||| || || || || ||| || Sbjct 105126 TGCACCTCACCACTGAAACGCTCGACAAGGTTCTCGTTGACGATGCCATCGGAGGCAGCG 105185 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTA-ATTTATTCCAA 42538 || || || | || || || ||| | ||||| | || | || ||||| Sbjct 105186 AAGAAGGCGAGAACGTGGGAGATGAAAAAGCGCTCGTCGTCATTGAGACGCTTGTTCCAG 105245 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 || | | ||| || || | ||| | || || | ||||| || || || |||||||| Sbjct 105246 TCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAAGAGGCCTCTGCCTTC 105305 Query 42599 TTATACATATTCCAGAT 42615 || ||||| | |||||| Sbjct 105306 TTGTACATCTGCCAGAT 105322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134913098360