Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq246 98.7 8e-16 seq35 93.3 4e-14 >seq246 Length=221927 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| |||||||| || | || | || |||||||||||||| |||||||||||||| | Sbjct 103085 ACCACCGCGCAATCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGA 103144 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || ||||||||||||||||||| || | || || | |||||| || || Sbjct 103145 CAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGG 103204 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||||||| || || ||||| | | || ||||| || | |||| Sbjct 103205 GATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCG--ATGGTGTCTGAGCTCTCC 103262 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || |||||||| || || || || |||||||| Sbjct 103263 ACTTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCC 48574 ||| || || || ||||||||||| || |||||||| || | | | |||| || ||||| Sbjct 102875 CACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGAC-AGTGTCCTGC-CGTCC 102932 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||| |||||| || || |||| | ||||||||| || || | | ||||||||| Sbjct 102933 TCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 102992 Query 48635 ATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || || ||||| | | || ||||| || | |||| || | || |||| Sbjct 102993 TGGATCTTTGACTTGACGTTGTCG--ATGGTGTCTGAGCTCTCCACTTCCAGGGTGATGG 103050 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| ||||| || || || |||||||| Sbjct 103051 TCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 >seq35 Length=320448 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||||||||||| || |||||||| || | | || ||||||| |||||| Sbjct 216257 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCCTCGAGCTGC 216198 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || || |||||||| ||| || | || ||||||||| || || Sbjct 216197 TTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTG 216138 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | |||||| ||||| || ||||||||||| ||| Sbjct 216137 GACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTTACCCGTG 216078 Query 48704 A 48704 | Sbjct 216077 A 216077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421248576526511