Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq497 141 1e-28 >seq497 Length=111328 Score = 141 bits (156), Expect = 1e-28 Identities = 369/560 (66%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||||| ||||| || | || || |||||||| || ||||| Sbjct 104766 CAGGCGAAGTCGGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGA 104825 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || | ||| ||||||||||| || ||||| || ||||| || ||||| ||||| |||||| Sbjct 104826 CCTGCCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAATGAACCAGAGAAGAAG 104885 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG-TCATGT-- 33480 || || || || || || || |||||||| || | | | |||| || ||| Sbjct 104886 ATACCCTCAACGGCGGCGAAAGCAATAAGCCTGCAGGCGAA---TGTGCTGTTCTTGTCG 104942 Query 33481 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 |||||| | |||||| || |||||||| | ||||| || | || ||||| Sbjct 104943 CTGATCCACCTCAAAGCCCAGTCAGCCTTCTTGCGGATGCAAGGAATGTTGTCGATGGCG 105002 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 || ||||| ||| | | | || || | | || || ||||| | ||| || Sbjct 105003 TTGAAGAGGTAGGTCCTCTGCTTGGGTTCACTGATGTAGGTGTCGATGAGGAGAGAGTAT 105062 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 ||||||| || ||||| || || ||||| ||||||||||| || || ||||| | Sbjct 105063 GTTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACCTGGCCTCTGGG 105122 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 ||||| || || || || || || | | || || || || || || || ||| Sbjct 105123 ATCTGCACCTCACCACTGAAACGCTCGACAAGGTTCTCGTTGACGATGCCATCGGAGGCA 105182 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTC 33774 || || || || | || || || ||| | ||||| | | | || ||| Sbjct 105183 GCGAAGAAGGCGAGAACGTGGGAGATGAAAAAGCGCTCGTCGTCATTGAGACGCTTGTTC 105242 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 || || | | ||| || || | ||| | || || | ||||| || || ||||||||| Sbjct 105243 CAGTCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAAGAGGCCTCTGCC 105302 Query 33835 TTTTTATACATGTTCCAGAT 33854 || || ||||| | |||||| Sbjct 105303 TTCTTGTACATCTGCCAGAT 105322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943220924760