Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq497 120 3e-22 seq246 113 4e-20 seq35 105 6e-18 seq112 89.7 5e-13 >seq497 Length=111328 Score = 120 bits (132), Expect = 3e-22 Identities = 343/516 (66%), Gaps = 11/516 (2%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCA-GCACCGC 46142 || || ||| | |||||||| | |||||||| ||| |||||||| | || | || || Sbjct 104989 ATTCCTTGCATCCGCAAGAAGGCTGACTGGGCTTTGAGGTGGATCAGCGACAAGAACAGC 104930 Query 46143 GACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAG 46202 || |||||| | | | || || || || ||||| |||| || ||||| Sbjct 104929 -ACATTCGCCTGCAGGCTTATTGCTTTCGCCGCCGTTGAGGGTATCTTCTTCTCTGGTTC 104871 Query 46203 TTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 |||||| ||||||| | |||| | ||| ||||| | || || || || ||| Sbjct 104870 ATTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGGCAGGTCTCACCTTCTCCAA 104811 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACAC 46322 |||||| || || || || |||||| |||| || ||||| || || || || | | | Sbjct 104810 CGAGCTCATCTCCCGTGATGAGGGCATGCACACCGACTTCGCCTGCCTT--CTTTT-CTC 104754 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAG--CATGTTCAAGGAGGCGGTG 46380 || | | | |||||| || | | | | | | ||| ||| || ||||| || Sbjct 104753 TCACCTCAAGCACAAGCCTGACCAAG-CTCTGGTC-GAGTCCATCATCGTCGAGGCCGTC 104696 Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440 || |||||| ||||||| |||| | ||| ||||| ||| |||| || ||||| || Sbjct 104695 GCTATTGAGCAGGAGTTCCTTACTGACGCCCTGCCTTGTGCGTTGCTCGGTATGAATGCC 104636 Query 46441 CAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAG 46500 || |||||| | ||||||||||| || || ||||| || || | | | || || Sbjct 104635 AAGCTCATGTGCCAGTACATCGAGTTCGTTGCAGACCGTCTCCTACT-CGCCCTCGGCAA 104577 Query 46501 CCG-AAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGG 46559 | | ||||| | || || || || || || || ||| | ||||| ||||| | || Sbjct 104576 CAGCAAGCACTACCATGCCACTAACCCCTTCGACTTCATGGAGAACATTTCCCTCGCTGG 104517 Query 46560 CAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||| || || || || || ||| | ||||| || || Sbjct 104516 CAAGACCAACTTCTTTGAGAAGAGAGTCGGTGACTA 104481 >seq246 Length=221927 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| | || || | || | || |||||| |||||||||||||| | Sbjct 103086 CCACCGCGCAATCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGAC 103145 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| || ||| |||| || | ||||||||| || ||| Sbjct 103146 AGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGG 103205 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | | ||| | Sbjct 103206 ATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACT 103265 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 103266 TCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| || || ||||| || Sbjct 103314 CCACCACGAAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCTGAG 103373 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || |||||||| ||| |||| || ||||||||||| || ||| Sbjct 103374 AGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGG 103433 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || |||| ||||| | Sbjct 103434 ATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACC 103493 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || || || ||||| |||||||| Sbjct 103494 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 103540 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | |||||| || || | || |||||| || |||||||| || | Sbjct 102858 CCACCACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGAC 102917 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | |||||| | ||||||||||||| | || | |||||||||||| || || Sbjct 102918 AGTGTCCTGCCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGA 102977 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | | ||| | Sbjct 102978 ATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACT 103037 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| ||||| || ||||| |||||||| Sbjct 103038 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || |||||||| ||| Sbjct 103542 CCACCACGAAGACGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 103601 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || || ||||| || || |||| | |||||||||||| ||||| Sbjct 103602 AGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGA 103661 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || || | |||||||| Sbjct 103662 ATGCCTTCCTTGTCCTGGATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTCGACC 103721 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | || | ||| || ||||| Sbjct 103722 TCAAGAGTGATGGTCTTGCCGGT 103744 >seq35 Length=320448 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||| || |||||||| || Sbjct 216281 CCACCACGCAGGCGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 216222 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| |||| || |||||||||||||| ||| Sbjct 216221 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 216162 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 216161 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACC 216102 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||||||||| || Sbjct 216101 TCGAGGGTGATGGTTTTACCCGT 216079 >seq112 Length=559721 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||||| | ||| || ||||| ||||||||||| ||| ||| Sbjct 120326 CCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 120267 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 | |||||||||||||| || ||||| || || ||||| Sbjct 120266 TCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 120230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009785018240