Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq122 140 2e-28 seq74 127 1e-24 seq246 87.8 1e-12 >seq122 Length=8359 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3232 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3291 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3292 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3326 >seq74 Length=25760 Score = 127 bits (140), Expect = 1e-24 Identities = 84/92 (91%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG- 25955 |||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 92 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 33 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATG 25987 ||||||| |||||||||||||||||||||||| Sbjct 32 TTAATCCATTCATGCGCGTCACTAATTAGATG 1 >seq246 Length=221927 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 || |||||| || |||||||||||||| || || ||||| || |||| | |||| Sbjct 102872 CAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGACAGTGTCCTGCCGTC 102931 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || || || || || || || || || || || || || | ||| | |||||| ||||| Sbjct 102932 CTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 102991 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || ||| ||| || || | || || ||| || || ||||| | || || || Sbjct 102992 TTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTGATGGT 103051 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || |||| || || ||||| |||||||| Sbjct 103052 CTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945114011641