Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq246 102 7e-17 seq35 89.7 4e-13 >seq246 Length=221927 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| || |||||||| | | | Sbjct 103084 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTGGAGAGCTCA 103025 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| ||| || ||||||||||| || ||||| || || || Sbjct 103024 GACACCATCGACAACGTCAAGTCAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 102965 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||||| ||||| | | || | || || |||||| Sbjct 102964 CAGCGTCTCATTTTCGCAGGCAAGCAGTTGGAGGACGGCAGGACACTGTCAGACTACAAC 102905 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 102904 ATCCAGAAGGA 102894 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || |||||||| | | | Sbjct 103312 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTGGAAGTGGAGAGCTCA 103253 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| ||| || ||||||||||| || || ||||| || || Sbjct 103252 GACACCATCGACAACGTCAAGTCAAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAG 103193 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || ||| | ||||| ||| ||| | || ||||||||| Sbjct 103192 CAGAGATTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCGGATTACAAC 103133 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||| | || | || | |||||||||| ||| Sbjct 103132 ATTCAGAAGGAGAGCACACTCCACCTTGTCCTCAGATTGCGCGGTGGT 103085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| | || Sbjct 103540 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 103481 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || |||||||||||||| ||||| || || Sbjct 103480 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 103421 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| || | |||||| |||||| |||| || ||||| Sbjct 103420 CAGCGATTGATCTTCGCTGGCAAGCAACTCGAGGATGGTCGCACCCTCTCAGACTACAAT 103361 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 103360 ATCCAGAAGGAGTCCACC 103343 >seq35 Length=320448 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || |||||||| |||| || || || || | | || ||| | ||| || |||| Sbjct 216079 ACGGGTAAAACCATCACCCTCGAGGTTGAGTCTTCGGACACCATCGACAATGTCAAGTCC 216138 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| ||||| || || || || | || || |||||||| Sbjct 216139 AAGATCCAGGACAAGGAGGGTATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 216198 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| || ||| |||| || |||||||| || || || |||| | || Sbjct 216199 CAGCTCGAGGACGGTCGTACCCTCTCGGACTACAACATCCAGAAGGAGAGCACCCTTCAC 216258 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| |||| || ||| Sbjct 216259 CTGGTCCTGCGCCTGCGTGGTGGT 216282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725386012715