Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq497 125 1e-23 seq112 98.7 2e-15 >seq497 Length=111328 Score = 125 bits (138), Expect = 1e-23 Identities = 271/400 (68%), Gaps = 4/400 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| | || || || ||||||||||||||||||||| ||| Sbjct 104499 TCAAAGAAGTTGGTCTTGCCAGCGAGGGAAATGTTCTCCATGAAGTCGAAGGGGTTAGTG 104558 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||| ||| |||||| | ||| || || | | || |||||||| || ||||| | Sbjct 104559 GCATGGTAGTGCTTGCTGTTGCCGAGGGCGAGTAGGAGACGGTCTGCAACGAACTCGATG 104618 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACG-ACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | | ||||| || | || ||| |||||| | || ||| | Sbjct 104619 TACTGGCACATGAGCTTGGCATTCATACCGAGCA-ACGCACAAGGCAGGGCGTCAGTAAG 104677 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACA- 251800 ||| |||| || | || || ||||| | | || | || ||| | || | | || Sbjct 104678 GAACTCCTGCTCAATAGCGACGGCCTCGACGATGATGGACTCGACCAGAGCTTG-GTCAG 104736 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 |||||| || || | ||| | || || | | || | ||||| ||||| || | Sbjct 104737 GCTTGTGCTTGAGGTGAGAGAAAAGAAGGCAGGCGAAGTCGGTGTGCATGCCCTCATCAC 104796 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 | ||||| ||||||||| | || || | ||| | ||||| ||| ||||||||| Sbjct 104797 GGGAGATGAGCTCGTTGGAGAAGGTGAGACCTGCCATGAGGCCACGCTTCTTGAGCCAGA 104856 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||| | | ||| || |||||||| | | |||||| || Sbjct 104857 AGATGGAGGCAAATGAACCAGAGAAGAAGATACCCTCAAC 104896 >seq112 Length=559721 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| ||||| || || || ||||| || ||||||||||| |||| || ||| Sbjct 36069 TCTCGTATTGCAGTCATCGGTCCAAACGGTGCTGGCAAGTCTACCCTTGTCAACGTTCTG 36010 Query 280221 ACTGGCGAGACCCAGGCCA-CTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | || ||| ||| || |||| |||| ||||| || || || Sbjct 36009 ACTGGTGAG-CTCATCCCAACTGCCGGTGATGTTTACCAGCACGAGAACATCCGTATCGC 35951 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| ||||||||| |||||||||||| || || | Sbjct 35950 CTACATCAAGCAGCACGCTTTCGCCCACATCGACCACCACCTGGACAGCACCCCATCTGA 35891 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 35890 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACCATGGACCG 35840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830070559751