Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq246 199 7e-46 seq497 149 1e-30 seq35 136 7e-27 >seq246 Length=221927 Score = 199 bits (220), Expect = 7e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| | || |||||||| || ||| ||| || |||||||| || || || Sbjct 102857 TCCACCACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGA 102916 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 |||||||| || || || |||||||| || ||||| ||||| | || ||||| || || Sbjct 102917 CAGTGTCCTGCCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGG 102976 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||||||||||||||| ||||||| ||||||| ||||||||||||| || || Sbjct 102977 AATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCAC 103036 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||||||| || || || || ||||||||||| |||||||| Sbjct 103037 TTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 179 bits (198), Expect = 7e-40 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||| ||| || || ||||| ||||| || || || | || || || | ||| Sbjct 103109 GTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGACAGGGTACGGCCGTCCTCCAGCTG 103168 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| || | ||| || ||||| ||||| ||||||||||||||||| ||||| Sbjct 103169 CTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTT 103228 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || ||||||| ||||||||||||| || ||||||| ||||||||| ||||| || Sbjct 103229 TGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTGATGGTCTTTCCGGT 103288 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||| |||||||| Sbjct 103289 GAGGGTCTTGACGAAGATCTGCAT 103312 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || |||||||| || ||||| || || || ||| Sbjct 103314 CCACCACGAAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCTGAG 103373 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || ||||| || | || || ||||| ||||| Sbjct 103374 AGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGG 103433 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| || ||||||||||| | || || || Sbjct 103434 ATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACC 103493 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||||||||| |||||||| Sbjct 103494 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 103540 Score = 127 bits (140), Expect = 4e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || |||||||| || |||||||| || ||||| Sbjct 103542 CCACCACGAAGACGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 103601 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| || || || || || | || ||||| || ||| Sbjct 103602 AGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGA 103661 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| | ||| ||| ||||||||||| | || || || Sbjct 103662 ATGCCTTCCTTGTCCTGGATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTCGACC 103721 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||||| || || |||| Sbjct 103722 TCAAGAGTGATGGTCTTGCCGGTGA 103746 >seq497 Length=111328 Score = 149 bits (164), Expect = 1e-30 Identities = 303/450 (67%), Gaps = 0/450 (0%) Strand=Plus/Plus Query 9921 TTGTCGTCGGCATTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAG 9980 |||| || ||| | |||||| || ||||||||||| || || | ||| |||||| Sbjct 104448 TTGTTGTGGGCCTCCATGACACCAGCCTTCTGGTAGTCACCGACTCTCTTCTCAAAGAAG 104507 Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| |||||| ||||||||||| |||||||||||| |||||||| ||| | Sbjct 104508 TTGGTCTTGCCAGCGAGGGAAATGTTCTCCATGAAGTCGAAGGGGTTAGTGGCATGGTAG 104567 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTC 10100 |||||| || ||||| || | | ||||| || ||||||||||||||||||| | Sbjct 104568 TGCTTGCTGTTGCCGAGGGCGAGTAGGAGACGGTCTGCAACGAACTCGATGTACTGGCAC 104627 Query 10101 ATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTT 10160 || || | | ||||| || | || || || | |||||| || ||| |||| Sbjct 104628 ATGAGCTTGGCATTCATACCGAGCAACGCACAAGGCAGGGCGTCAGTAAGGAACTCCTGC 104687 Query 10161 TCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCG 10220 || | ||||| || || ||| |||| || |||| | || |||||| || | Sbjct 104688 TCAATAGCGACGGCCTCGACGATGATGGACTCGACCAGAGCTTGGTCAGGCTTGTGCTTG 104747 Query 10221 AGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAAC 10280 || | || | || || | || | ||| | |||||| || ||| ||||| | Sbjct 104748 AGGTGAGAGAAAAGAAGGCAGGCGAAGTCGGTGTGCATGCCCTCATCACGGGAGATGAGC 104807 Query 10281 TCGTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAG 10340 |||||||| || ||||| | |||||| || || || |||||||| |||| | Sbjct 104808 TCGTTGGAGAAGGTGAGACCTGCCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCA 104867 Query 10341 AACGACCCGGAGAACAGAAGACCCTCCACG 10370 || || || ||||| | | |||||| ||| Sbjct 104868 AATGAACCAGAGAAGAAGATACCCTCAACG 104897 >seq35 Length=320448 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || ||| ||| || |||||||| || || ||| Sbjct 216281 CCACCACGCAGGCGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 216222 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || ||||| ||||| Sbjct 216221 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 216162 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 216161 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACC 216102 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||||||||| ||||||| Sbjct 216101 TCGAGGGTGATGGTTTTACCCGTGA 216077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616513136920