Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq497 343 3e-89 seq13 197 3e-45 >seq497 Length=111328 Score = 343 bits (380), Expect = 3e-89 Identities = 594/852 (70%), Gaps = 12/852 (1%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||||||||||||||| || ||| Sbjct 105322 ATCTGGCAGATGTACAAGAAGGCAGAGGCCTCTTTCTGGACCGCCGAGGAGATCGATCTG 105263 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCAC-TGTC--TGAGAACGAAAAGTTTTTCCTCAAA 42416 ||||||| || |||| | | | || ||| |||| |||||| || Sbjct 105262 TCCAAGGATCTTCACGACTGGAACAAGCGTCTCAATGACGACGAGCGCTTTTTCATCTCC 105203 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||| ||||| || ||||| ||||| |||||||| | | | Sbjct 105202 CACGTTCTCGCCTTCTTCGCTGCCTCCGATGGCATCGTCAACGAGAACCTTGTCGAGCGT 105143 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||||||||| | ||||| | ||||||||||| |||||||| || Sbjct 105142 TTCAGTGGTGAGGTGCAGATCCCAGAGGCCAGGTGCTTCTACGGATTCCAGATCATGATG 105083 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||| || ||| | || || |||| |||||| || ||| Sbjct 105082 GAGAACATCCACTCGGAAACATACTCTCTCCTCATCGACACCTACATCAGTGAACCCAAG 105023 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 || | | | || ||||| ||||| || | || || |||||| |||||||| ||| Sbjct 105022 CAGAGGACCTACCTCTTCAACGCCATCGACAACATTCCTTGCATCCGCAAGAAGGCTGAC 104963 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||||| | | |||||| || | | || | || |||| | ||||| | || || Sbjct 104962 TGGGCTTTGAGGTGGATC-AGCGACAAGAACAGCACATTCGCCTGCAGGCTTATTGCTTT 104904 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 ||||||| ||||| ||||||||||| || | || ||||||||||||||||||||| | Sbjct 104903 CGCCGCCGTTGAGGGTATCTTCTTCTCTGGTTCATTTGCCTCCATCTTCTGGCTCAAGAA 104844 Query 42776 GAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | || || ||| | || ||||||||||| ||||| |||||| | | || ||||| Sbjct 104843 GCGTGGCCTC-ATGGCAGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGCA 104785 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 |||| | ||||| |||||||| || ||||| ||||||| ||||||||| | | Sbjct 104784 TGCACACCGACTTCGCCTGCCTTCTTTTCTC---TCACCTCAAGCACAAGCCTGACCAAG 104728 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 | |||| | |||||||| |||||||| | || ||| |||||||||| || | Sbjct 104727 CTCTGGTCGAGTCCATCATCGTCGAGGCCGTCGCTATTGAGCAGGAGTTCCTTACTGACG 104668 Query 42955 CGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 | ||||| ||| | || |||| ||||| | | ||||||||| |||||||| ||| | Sbjct 104667 CCCTGCCTTGTG-CGTTGCTCGGTATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTC 104609 Query 43014 GTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCC 43073 || || |||| |||||| | | || |||| | |||| | | | |||| Sbjct 104608 GTTGCAGACCGTCTCCTACTCGCCCTCGGCAACAGCAAGCACTACCATGCCACTAACCCC 104549 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 |||||||| ||||||||||| || | | |||||||||||||| || |||||| | ||| Sbjct 104548 TTCGACTTCATGGAGAACATTTCCCTCGCTGGCAAGACCAACTTCTTTGAGAAGAGAGTC 104489 Query 43134 GCCGACTACCAG 43145 | ||||||||| Sbjct 104488 GGTGACTACCAG 104477 >seq13 Length=329804 Score = 197 bits (218), Expect = 3e-45 Identities = 509/765 (67%), Gaps = 24/765 (3%) Strand=Plus/Minus Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||| ||||| |||||||| ||||| || | ||||||| | |||||||||||||| Sbjct 256452 GGCAAGGTTACAGACGGCAACCTCATCGGGAGCAGTGTACTCAATGATCTCGGTGCAGAG 256393 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| || ||||||||| |||| || || ||| ||| |||| |||||||| Sbjct 256392 GTTGGAGCTGCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTACGGTTGGCAGCGTCCTT 256333 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||| |||||||| || || |||||| |||||| | || | | | ||||| | Sbjct 256332 GTAAAGCATGAATGGGTTTCCAGTCTCGGTCTGGGCCTCTAGAATGGCATACCAGATCTT 256273 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 || | || ||| ||| ||| | ||||| |||||| | ||| || | | Sbjct 256272 TTGGGCTCTAACGGTCTCGCG-GCCGCGACCCTCACGCTCGTATCTCTCGTAAAGCTCTT 256214 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 | || || ||| |||| || | || || |||||| |||||||||||| ||| Sbjct 256213 CAAATTCATCGCCGTAGACATCAGCGAGACCAGGGCACTCATTTGGGCACATGAGAGTCC 256154 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | |||| || | ||| | || ||||||||| || || ||||||||||| | ||||| Sbjct 256153 AGGTGCCGTTATCTTGGACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAGA 256094 Query 245046 GGTC-----CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 |||| | || | ||| || |||| | |||||| | || |||| ||| | Sbjct 256093 GGTCACGGGCACGGACTTCTTCTTTTCCGTG-----GTTCTTACGGAGATCCAGGAAGGC 256039 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 || || || | ||||| ||||| | || | || | ||| || || || ||||| || Sbjct 256038 CAAAACATCCGCATGCCATGGCTCGAGATATATGGCAAAGGCACCTGGGCGTTTGTTACC 255979 Query 245161 TCCCTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 || |||||||| ||| | || | |||||| | ||| || | ||||| | || | Sbjct 255978 ACCTTGGTCCACATACCTGGC-AGTGTTGTTGAACACGCGGAGCATGGGCACCAGACCAT 255920 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACA 245279 | ||| ||||||||| || | ||||||| ||| | | |||| | | | ||| || Sbjct 255919 TGGAGGTGCCGTTGGTACCGCTAATGTAGGAGCCAGTTGCTCTGA---TAC-GGTGGGCA 255864 Query 245280 T----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 | || | ||| || |||| ||||||||| | ||| || |||| | ||||| Sbjct 255863 TTCAGACCGATTCCACCAGCGTTCTTGGAGATCATGGCACACGTCTTCAGTGTGTCGTAG 255804 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 || || || |||||||| |||||| | || || ||||| |||| |||| ||||||| Sbjct 255803 ATACCATCAATGCTGTCATCCTTCATATCGATGAGGAAGCACGAGGCAAGCT-GGGCTTG 255745 Query 245396 -GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||| | | | |||| || || || |||||| || ||||| Sbjct 255744 TGGGGTACCAGCACTGAAGAGGGTTGGAGAGGCGTGTGTGAAGTA 255700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333168033360