Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq246 134 3e-26 seq497 93.3 1e-13 >seq246 Length=221927 Score = 134 bits (148), Expect = 3e-26 Identities = 173/236 (73%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 |||||||| || ||||| || || | || | ||||| || || ||||| || ||||| Sbjct 102855 TGTCCACCACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCT 102914 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || | ||||| || || || || |||||||| || |||||||| || ||| Sbjct 102915 GACAGTGTCCTGCCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGG---TCT 102971 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTC 288417 ||| || ||||| || || ||||| || | || ||||| || || | || |||| Sbjct 102972 GGGGGAATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTC 103031 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| ||||| |||||||||||||||||||| |||||||| Sbjct 103032 ---TCCACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| ||||| || | ||| || || |||||||| ||||| | | Sbjct 103314 CCACCACGAAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCTGAG 103373 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||| || || |||||||||| ||||| || |||| Sbjct 103374 AGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGG 103433 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | ||||| || || || | ||| || || || Sbjct 103434 ATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACC 103493 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||||||||| |||||||| Sbjct 103494 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 103540 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | ||| || || || || | ||||| || || || || || || || | Sbjct 103086 CCACCGCGCAATCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGAC 103145 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||||| | ||| || |||| Sbjct 103146 AGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGG 103205 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || || ||||| || | || ||||| || || | || |||| || Sbjct 103206 ATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTC---TCC 103262 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 103263 ACTTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 >seq497 Length=111328 Score = 93.3 bits (102), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178 |||||| || |||||| | || ||| | || |||||||||||||| | |||||| Sbjct 104683 GAGTTCCTTACTGACGCCCTGCCTTGTGCGTTGCTCGGTATGAATGCCAAGCTCATGTGC 104624 Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAG-TGTA 269237 || || ||||| ||||| || || ||| || | || ||||| | || ||| || Sbjct 104623 CAGTACATCGAGTTCGTTGCAGACCGTCTCCTACTCGCCCTCGG-CAACAGCAAGCACTA 104565 Query 269238 CAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTT 269297 | || | | || ||||||| ||| ||||| ||||| |||| || ||||| ||||| Sbjct 104564 CCATGCCACTAACCCCTTCGACTTCATGGAGAACATTTCCCTCGCTGGCAAGACCAACTT 104505 Query 269298 CTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 ||| || ||| | ||| | ||||| || ||||||| ||| Sbjct 104504 CTTTGAGAAGAGAGTCGGTGACTACCAGAAGGCTGGTGTCATG 104462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179646676581458