Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq246 123 3e-23 seq35 87.8 2e-12 >seq246 Length=221927 Score = 123 bits (136), Expect = 3e-23 Identities = 151/202 (75%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 42011 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 42070 |||||||||||| ||||| |||||||| | ||| || || |||| || ||||||||||| Sbjct 103115 TGTGCTCTCCTTCTGAATGTTGTAATCCGACAGGGTACGGCCGTCCTCCAGCTGCTTACC 103174 Query 42071 AGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 42130 |||||| || | || ||||||||| | ||| | || |||||||| ||| ||| || Sbjct 103175 AGCGAAGATCAATCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTTGACTT 103234 Query 42131 GAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 || ||| | | | ||||| |||| ||||| || | |||||||| || || || | Sbjct 103235 GA-CGTTGTCGATGGTGTCTGAGCTC---TCCACTTCCAGGGTGATGGTCTTTCCGGTGA 103290 Query 42187 GCGTCTTTACAAAGATTTGCAT 42208 | ||||| || ||||| ||||| Sbjct 103291 GGGTCTTGACGAAGATCTGCAT 103312 Score = 114 bits (126), Expect = 1e-20 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 || |||||| || | ||||||||||| || || ||||| || | ||| |||| |||| Sbjct 102872 CAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGACAGTGTCCTGCCGTC 102931 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || | |||||| || ||||| ||||| ||||||||||| | || | || |||||||| Sbjct 102932 CTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 102991 Query 42116 CATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGA 42171 ||| ||| |||| ||| | | | ||||| |||| ||||| || | |||| Sbjct 102992 TTGGATCTTTGACTTGA-CGTTGTCGATGGTGTCTGAGCTC---TCCACTTCCAGGGTGA 103047 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| || ||||| ||||| Sbjct 103048 TGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || | || || || | || || || ||||| |||||||| Sbjct 103349 CTCCTTCTGGATATTGTAGTCTGAGAGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAA 103408 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | |||||||||||| | ||| | | |||||||||| ||| || || | | Sbjct 103409 GATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATT 103468 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || ||||| |||| |||||||| ||||| || || ||||| || Sbjct 103469 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGAC 103528 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 103529 GAAGATCTGCAT 103540 >seq35 Length=320448 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||| || | ||||||||||| || || ||||| || | || || || || Sbjct 216269 CGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCG 216210 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || | ||||||||||| | ||| | | ||||||| Sbjct 216209 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTG 216150 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || |||| | | | ||||| || || || |||| |||||| Sbjct 216149 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATG 216090 Query 42174 GTTTTGCCCGT 42184 ||||| ||||| Sbjct 216089 GTTTTACCCGT 216079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209330228240