Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq497 123 2e-23 seq246 91.5 1e-13 seq35 82.4 8e-11 >seq497 Length=111328 Score = 123 bits (136), Expect = 2e-23 Identities = 501/772 (65%), Gaps = 43/772 (6%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 || || |||||||||| ||| ||| ||||| | || |||||||| ||| ||||| || Sbjct 105229 AATGACGACGAGCGCTTTTTCATCTCCCACGTTCTCGCCTTCTTCGCTGCCTCCGATGGC 105170 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GAGGCGCA 52204 ||||| ||| ||||| ||||| | ||| || | | | || | | ||||| Sbjct 105169 ATCGTCAACGAGAACCTTGTCGAGCGTTT-CAGTGGTGAGGTGCAGATCCCAGAGGCCAG 105111 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || || || | | || ||| | | ||| |||| | ||| ||| || Sbjct 105110 GTGCTTCTACGGATTCCAGATCATGATGGAGAACATCCACTCGGAAACATACTCTCTCCT 105051 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCACGAGCGC--GAC--ACGCTGCTGAATGCGTTCG 52320 ||| || || || | | || ||| | | ||| ||| || || | || || ||| Sbjct 105050 CATCGA-CACCT-ACATCAG-TGAACCCAAGCAGAGGACCTAC-CTCTTCAACGCCATCG 104995 Query 52321 AGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACA 52380 | || | || ||| | ||||| |||||| | ||||| ||| ||||||| ||||||| Sbjct 104994 ACAACATTCCTTGCATCCGCAAGAAGGCTGACTGGGCTTTGAGGTGGATC---AGCGACA 104938 Query 52381 C---CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttttttt 52437 | ||| | ||| | | | || |||||| || ||||| | || || | Sbjct 104937 AGAACAGCACATTCGCCTGCAGGCTTATTGCTTTCGCCGCCGTTGAGGGTATCTTCTTCT 104878 Query 52438 CCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGT 52497 | || |||||| ||||||| | | || | | ||| | ||| | || || || | Sbjct 104877 CTGGTTCATTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGGCAGGTCTCACCT 104818 Query 52498 TCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT----- 52552 || ||||||| | || || || || || || ||||||| ||||| || ||||| Sbjct 104817 TCTCCAACGAGCTCATCTCCCGTGATGAGGGCATGCACACCGACTTCGCCTGCCTTCTTT 104758 Query 52553 ---CT-ACTACAAG-ACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATG 52607 || || |||| || || ||||| | | | || | | ||| | ||| Sbjct 104757 TCTCTCACCTCAAGCACAAGCCTGACCAA-------GCTCTGGTCGAG-TCC--ATCATC 104708 Query 52608 TTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTG 52667 || ||||| || ||||| || ||||||| |||| | ||| ||||| | | || Sbjct 104707 GTC---GAGGCCGTCGCTATTGAGCAGGAGTTCCTTACTGACGCCCTGCCTTGTGCGTTG 104651 Query 52668 CTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTG 52727 || || ||||| || || ||||||| ||||||||||||| || || || ||||| | Sbjct 104650 CTCGGTATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTCGTTGCAGACCGTCTCCTA 104591 Query 52728 GTGCAGCTCGG--GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACA 52785 | ||||| |||| ||| ||| | | || || || || || || ||| | | Sbjct 104590 CTCGCCCTCGGCAACAGC--AAGCACTACCATGCCACTAACCCCTTCGACTTCATGGAGA 104533 Query 52786 ACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||| || | |||||||||||||| || |||||| ||||||| || || Sbjct 104532 ACATTTCCCTCGCTGGCAAGACCAACTTCTTTGAGAAGAGAGTCGGTGACTA 104481 >seq246 Length=221927 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--TCCTCGAGTTGTTTACCGG 138478 |||||||| || || |||||||| | | || |||| ||||||||||| || || | Sbjct 103347 GACTCCTTCTGGATATTGTAGTC--TGAGAGGGTGCGACCATCCTCGAGTTGCTTGCCAG 103404 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| | ||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 103405 CGAAGATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTCA 103464 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||||| ||||||||||||| || | || || ||||| || || Sbjct 103465 CATTG-TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTC 103523 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 103524 TTGACGAAGATCTGCAT 103540 >seq35 Length=320448 Score = 82.4 bits (90), Expect = 8e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || ||||||||||| | ||||| ||||||||| || || |||| | Sbjct 216246 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 216187 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| | ||||| |||||||| || ||||| || ||||| ||| || || | ||| Sbjct 216186 GATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 216127 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 | || | |||||| | ||||| ||||||| || | |||||||| || Sbjct 216126 G-TCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTTACCCGT 216079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259230123920