Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq497 116 4e-21 seq246 113 4e-20 seq35 84.2 2e-11 >seq497 Length=111328 Score = 116 bits (128), Expect = 4e-21 Identities = 403/619 (65%), Gaps = 41/619 (7%) Strand=Plus/Minus Query 46979 CATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGA--CGAAG-AGAA 47035 ||||||| |||||| ||| || ||||| || || ||||| || | ||| ||| Sbjct 105077 CATCCACTCGGAAACATACTCTCTCCTCATCGACACCTACATCAGTGAACCCAAGCAGAG 105018 Query 47036 GCAAGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTG 47095 | | | || || || |||| |||| | ||| || ||| | |||| ||||| || || Sbjct 105017 G--ACCTAC-CTCTTCAACGCCATCGACAACATTCCTTGCATCCGCAAGAAGGCTGACTG 104961 Query 47096 GGCCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCC-GAACGTTTGATCGCTTTCG 47154 ||| ||| || || || | ||| ||| | ||| | | | || || ||||||| Sbjct 104960 GGCTTTGAGGTGGATCAGCGACAAGAACAGCACATTCGCCTGCAGGCTT-ATTGCTTTCG 104902 Query 47155 CCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCA 47214 || ||| ||||| |||||||||| || ||||| | || || | | || | Sbjct 104901 CCGCCGTTGAGGGTATCTTCTTCTCTGGTTCATTTGCCTCCATCTTCTGGCTCAAGAAGC 104842 Query 47215 AAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGC 47274 || | ||| | || ||||| || ||||||||| ||||| | || || ||| ||| Sbjct 104841 GTGGCCTCATGGCAGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGCATGC 104782 Query 47275 ACACCAACTTTGCCTG--------TCTCT-ACTACAA-CACTAGAGTCGATCAAAAGTTG 47324 ||||| |||| ||||| ||||| || ||| ||| || | || ||| || Sbjct 104781 ACACCGACTTCGCCTGCCTTCTTTTCTCTCACCTCAAGCACAAGCCT-GACCAAGCTCTG 104723 Query 47325 GACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTC 47384 | || | ||| | || | ||| |||||||| |||||| |||||| | Sbjct 104722 GTCGAGTCCATCATC------------GTCGAGGCCGTCGCTATTGAGCAGGAGTTCCTT 104675 Query 47385 GCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATC 47444 | || || ||||| | || | || ||||| || || | ||| | |||||||| Sbjct 104674 ACTGACGCCCTGCCTTGTGCGTTGCTCGGTATGAATGCCAAGCTCATGTGCCAGTACATC 104615 Query 47445 GAATTTGTCGCCGACCG---CCTGCTCGT--TCAGCTAAAGTATCCCAAGATTTACCACA 47499 || || || || ||||| ||| |||| || || | || |||| ||||| Sbjct 104614 GAGTTCGTTGCAGACCGTCTCCTACTCGCCCTCGGCAACAG-----CAAGCACTACCATG 104560 Query 47500 CCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCG 47559 || || || ||||| || ||| | |||||||| |||| |||||||||||||| || | Sbjct 104559 CCACTAACCCCTTCGACTTCATGGAGAACATTTCCCTCGCTGGCAAGACCAACTTCTTTG 104500 Query 47560 AGAAGCGCGTCGGCGAATA 47578 ||||| | ||||| || || Sbjct 104499 AGAAGAGAGTCGGTGACTA 104481 >seq246 Length=221927 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| || | |||||| ||| || || || || ||| Sbjct 103344 GTGGACTCCTTCTGGATATTGTAGTCTGAGAGGGTGCGACCATCCTCGAGTTGCTTGCCA 103403 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||||||||||||| || || || || |||||||||||| ||| || ||| Sbjct 103404 GCGAAGATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTC 103463 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | ||| || |||| ||| | || ||||| || || || Sbjct 103464 ACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTC 103523 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 103524 TTGACGAAGATCTGCAT 103540 Score = 102 bits (112), Expect = 8e-17 Identities = 166/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | || || |||||| || | || ||| || || || ||||| Sbjct 102852 TACTG-TCCACCACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTA 102910 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || || || | || || | ||| || || ||| | || | |||||||| || Sbjct 102911 GTCTGACAGTGTCCTGCCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTC 102970 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || ||||| |||||||| ||| || ||||| ||||| ||| |||||| | | Sbjct 102971 TGGGGGAATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGT-CGATGGTGTCTGAGC 103029 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||||| | ||| | || |||||||||||||| || || || |||||||| Sbjct 103030 TCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 >seq35 Length=320448 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| ||||||| |||||||| || || || || ||||||||| Sbjct 216209 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTG 216150 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||||| | ||| || |||| ||| | Sbjct 216149 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATG 216090 Query 127079 GTTTTGCCGGT 127089 ||||| || || Sbjct 216089 GTTTTACCCGT 216079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497762738640