Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq246 93.3 4e-14 >seq246 Length=221927 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || || || |||| ||| | || || || ||||| ||||| || || || | Sbjct 102857 TCCACCACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTC--T 102914 Query 45173 GACGGTTT--TAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 ||| || | | || ||||| || || |||||| | || | || |||||||| || Sbjct 102915 GACAGTGTCCTGCCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGG 102974 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || ||||| || ||| |||| || | || | |||||| || ||| Sbjct 102975 GGAATGCCTTCCTTGTCTTGGATCTTTGACTTGA-CGTTGTCGATGGTGTCTGAGCTCTC 103033 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || |||||||| ||||| || || || || ||||| Sbjct 103034 CACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| |||||||| || || || ||| | ||| || Sbjct 103332 ACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCTGAGAGGGTGCGACCATCCTCG 103391 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || || ||| | |||||||| |||||||| || || || || || || || || Sbjct 103392 AGTTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 103451 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || || | || | ||||||||||||||| || ||||| || | || ||| Sbjct 103452 ATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 103511 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || || ||||| Sbjct 103512 CCAGTAAGGGTCTTGACGAAGATCTGCAT 103540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000312829560