Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09]
511 sequences; 25,022,896 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq35 129 7e-25
seq246 125 8e-24
seq112 98.7 1e-15
>seq35
Length=320448
Score = 129 bits (142), Expect = 7e-25
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | || |||||||| ||||| |||||||| || || || || ||
Sbjct 216269 CGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCG 216210
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| |||||||||||||||||||| ||||||||||||||||| | || | | |||||||
Sbjct 216209 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTG 216150
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | ||||| || || || || | ||||||
Sbjct 216149 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATG 216090
Query 46559 GTTTTGCCCGT 46569
||||| |||||
Sbjct 216089 GTTTTACCCGT 216079
>seq246
Length=221927
Score = 125 bits (138), Expect = 8e-24
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||| || || ||||| | || ||||| |||||||| |||||
Sbjct 103349 CTCCTTCTGGATATTGTAGTCTGAGAGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAA 103408
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||| | || | | |||||||||| |||||| ||| | |
Sbjct 103409 GATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATT 103468
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || ||||| || | |||||||| ||||| || || || || ||
Sbjct 103469 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGAC 103528
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 103529 GAAGATCTGCAT 103540
Score = 114 bits (126), Expect = 1e-20
Identities = 158/217 (73%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|| ||||| || | || |||||||| ||||| |||||||| || || || | ||||
Sbjct 102872 CAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGACAGTGTCCTGCCGTC 102931
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| | ||||||||| ||||| || | ||||||||||| | || | || ||||||||
Sbjct 102932 CTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 102991
Query 46501 CATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGA 46556
|||||| ||||| ||| | | | ||||| |||| ||||| |||| ||||
Sbjct 102992 TTGGATCTTTGACTTGA-CGTTGTCGATGGTGTCTGAGCTC---TCCACTTCCAGGGTGA 103047
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||| ||||| || || || ||||| |||||
Sbjct 103048 TGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084
Score = 86.0 bits (94), Expect = 7e-12
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || || ||||| || || ||
Sbjct 103577 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 103636
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | || ||||||||| |||||| ||| | |||
Sbjct 103637 GATAAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTTA-CGT 103695
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | ||||| || || || || | |||||||| ||||| ||
Sbjct 103696 TGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 103744
>seq112
Length=559721
Score = 98.7 bits (108), Expect = 1e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||| || || || | || |||||||||||||||||||| |
Sbjct 120326 CCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 120267
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515
|||| ||||||||||| | || | || |||||||||| |||||| ||||
Sbjct 120266 TCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGCTCTT 120215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565234789539720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |