Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq35 129 7e-25 seq246 125 8e-24 seq112 98.7 1e-15 >seq35 Length=320448 Score = 129 bits (142), Expect = 7e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || |||||||| ||||| |||||||| || || || || || Sbjct 216269 CGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCG 216210 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||||||||| ||||||||||||||||| | || | | ||||||| Sbjct 216209 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTG 216150 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | ||||| || || || || | |||||| Sbjct 216149 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATG 216090 Query 46559 GTTTTGCCCGT 46569 ||||| ||||| Sbjct 216089 GTTTTACCCGT 216079 >seq246 Length=221927 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || || ||||| | || ||||| |||||||| ||||| Sbjct 103349 CTCCTTCTGGATATTGTAGTCTGAGAGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAA 103408 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | | |||||||||| |||||| ||| | | Sbjct 103409 GATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATT 103468 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||||| || | |||||||| ||||| || || || || || Sbjct 103469 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGAC 103528 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 103529 GAAGATCTGCAT 103540 Score = 114 bits (126), Expect = 1e-20 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 || ||||| || | || |||||||| ||||| |||||||| || || || | |||| Sbjct 102872 CAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGACAGTGTCCTGCCGTC 102931 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | ||||||||| ||||| || | ||||||||||| | || | || |||||||| Sbjct 102932 CTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 102991 Query 46501 CATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGA 46556 |||||| ||||| ||| | | | ||||| |||| ||||| |||| |||| Sbjct 102992 TTGGATCTTTGACTTGA-CGTTGTCGATGGTGTCTGAGCTC---TCCACTTCCAGGGTGA 103047 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| || || || ||||| ||||| Sbjct 103048 TGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || || ||||| || || || Sbjct 103577 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 103636 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || ||||||||| |||||| ||| | ||| Sbjct 103637 GATAAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTTA-CGT 103695 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | ||||| || || || || | |||||||| ||||| || Sbjct 103696 TGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 103744 >seq112 Length=559721 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| || || || | || |||||||||||||||||||| | Sbjct 120326 CCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 120267 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515 |||| ||||||||||| | || | || |||||||||| |||||| |||| Sbjct 120266 TCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGCTCTT 120215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234789539720