Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq497 324 1e-83 seq246 123 2e-23 seq35 100 3e-16 seq112 84.2 2e-11 >seq497 Length=111328 Score = 324 bits (358), Expect = 1e-83 Identities = 590/856 (69%), Gaps = 11/856 (1%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || || || || | |||||||| || || || || || | Sbjct 104462 CATGACACCAGCCTTCTGGTAGTCACCGACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGC 104521 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 | ||||||| | ||| || || |||||||| | | | |||||||||| || | Sbjct 104522 GAGGGAAATGTTCTCCATGAAGTCGAAGGGGTTAGTGGCATGGTAGTGCTTGCTGTTGCC 104581 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAAT 132769 ||| ||| || || | ||| || |||||||||||||| || ||||| | || ||| | Sbjct 104582 GAGGGCGAGTAGGAGACGGTCTGCAACGAACTCGATGTACTGGCACATGAGCTTGGCA-T 104640 Query 132770 TAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACC 132828 | | || |||| |||||| ||||| || || || || || ||||| || ||||| Sbjct 104641 TCATACCGAGCA-ACGCACAAGGCAGGGCGTCAGTAAGGAACTCCTGCTCAATAGCGACG 104699 Query 132829 GCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAAC 132888 || ||| || ||| | || | || | ||| ||| | || ||| Sbjct 104700 GCCTCGACGATGATGGACTCGACCAGAGCTTGGTCAGGCTTGTGCTTGAGGTGAGAGAAA 104759 Query 132889 ATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAA 132948 | | ||| || |||||| |||| |||||| || | ||| ||||| |||||| ||| Sbjct 104760 AGAAGGCAGGCGAAGTCGGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAG 104819 Query 132949 GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA 133008 || | || | ||||||||| || || |||||||| || |||| ||| || || || Sbjct 104820 GTGAGACCTGCCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAATGAACCAGAG 104879 Query 133009 AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG 133068 ||||||| ||||| ||||| |||||||| | || | | |||| ||| | ||| Sbjct 104880 AAGAAGATACCCTCAACGGCGGCGAAAGCAATAAGCCTGCAGGCGAATGTGCTGTTCTTG 104939 Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATG 133128 | |||||| | || ||||| || ||||| | || ||| || || | |||||| Sbjct 104940 TCGCTGATCCACCTCAAAGCCCAGTCAGCCTTCTTGCGGATGCAAGGAATGTTGTCGATG 104999 Query 133129 GCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCG 133186 ||||| || | | || | |||| | || | | | |||||||||||||||| | Sbjct 105000 GCGTTGAAGAG--GTAGGTCCTCTGCTTGGGTTCACTGATGTAGGTGTCGATGAGGAGAG 105057 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 | || |||||||||| | ||||||||| ||| || || ||||| ||||||| |||| Sbjct 105058 AGTATGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACCTGGCCT 105117 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGC 133306 | | |||||| || | |||||||||||| || || |||||||||||||| ||| Sbjct 105118 CTGGGATCTGCACCTCACCACTGAAACGCTCGACAAGGTTCTCGTTGACGATGCCATCGG 105177 Query 133307 TGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC- 133365 ||| ||||| ||||| || ||||| ||||||| |||||||| ||| || | ||| Sbjct 105178 AGGCAGCGAAGAAGGCGAGAACGTGGGAGATGAAAAAGCGCTCGTCGTCATTGAGACGCT 105237 Query 133366 --TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 | ||||||| | ||||||||||| || | ||||||| ||||||| || || |||| Sbjct 105238 TGTTCCAGTCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAAGAGGCCT 105297 Query 133424 CGGCTTTTTTGTACAT 133439 | || || |||||||| Sbjct 105298 CTGCCTTCTTGTACAT 105313 >seq246 Length=221927 Score = 123 bits (136), Expect = 2e-23 Identities = 162/217 (75%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| | | Sbjct 103084 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTGGAGAGCTCA 103025 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || ||| |||| ||||| || || |||||| | ||||| Sbjct 103024 GACACCATCGACAACG-TCAAGTCAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 102966 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 38420 ||||| ||||||| ||| ||||| ||| |||| |||| || ||| ||| |||||| Sbjct 102965 GCAGCGTCTCATTTTCGCAGGCAAGCAGTTGGAGGACGGCAGGACACTGTCA--GACTAC 102908 Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTG 38456 |||||||| ||||| ||| || || || ||||||||| Sbjct 102907 AACATCCAGAAGGAGAGC-ACTCTCCACTTGGTGCTG 102872 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/171 (73%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| |||||||| | || |||||| || | |||| | | | |||| |||| Sbjct 103746 TCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACG--TAAA 103689 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| || || ||||| | ||||| ||||| || || | || || Sbjct 103688 GTCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAGCAGCGTCTTATCTTTGCTGG 103629 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 || || || || |||| |||||||| ||||||||||||||| ||||| Sbjct 103628 AAAGCAACTTGAAGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGA 103578 >seq35 Length=320448 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 ||||||| |||||||||||| |||| || ||| | | |||| | | | | | || Sbjct 216077 TCACGGGTAAAACCATCACCCTCGAGGTTGAGTCTTCGGACACCATCGACAATGTCAAGT 216136 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| || || | ||||| ||||| | || | ||| |||| Sbjct 216137 CCAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCA 216196 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTG 38444 | ||||| || |||| || |||||| |||||||||||||| ||||| ||| || || Sbjct 216197 AGCAGCTCGAGGACGGTCGTACCCTCTCGGACTACAACATCCAGAAGGAGAGC-ACCCTT 216255 Query 38445 CATTTGGTGCTGCG 38458 || |||| ||||| Sbjct 216256 CACCTGGTCCTGCG 216269 >seq112 Length=559721 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | ||||| ||||| | || | ||| ||||| Sbjct 120221 AAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTTTGATCTTCGCCGGCAAG 120280 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 ||||| || || | || ||||||| ||||||||||||||| |||| Sbjct 120281 CAGCTCGAGGATGGCCGTACCCTCAGCGACTACAACATCCAGAAGG 120326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169605146240