Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq246 163 6e-35 seq35 100 6e-16 >seq246 Length=221927 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| || | ||| |||||| ||| || || || ||||| || | || || || Sbjct 102867 AGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGACAGTGTCCTG 102926 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || | |||||| |||||||| || || || || |||||||| ||||||||||| Sbjct 102927 CCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCCTTCC 102986 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || ||| ||||||||| || |||||||| || || |||||||| ||||| Sbjct 102987 TTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTG 103046 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||| ||| || ||||| | ||||| Sbjct 103047 ATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||| ||| || ||||| |||||||| | || || | || || || Sbjct 103104 ACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGACAGGGTACGGCCGTCCTCC 103163 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| | || || |||||||| || |||||||| |||||||| Sbjct 103164 AGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGG 103223 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||||||||| || |||||||| || || |||||||| ||||| | |||||| Sbjct 103224 ATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTGATGGTCTTT 103283 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 103284 CCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 Score = 140 bits (154), Expect = 7e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| |||| ||| || | || ||||| Sbjct 103560 ACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCA 103619 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || |||||||| || || |||||||||||||||||||| ||||| || Sbjct 103620 AGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGG 103679 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || ||||||||||| || || ||||| || | ||||| Sbjct 103680 ATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTG 103739 Query 195112 CCTGT 195116 || || Sbjct 103740 CCGGT 103744 >seq35 Length=320448 Score = 100 bits (110), Expect = 6e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||| ||| || || || ||||| || | || || | || || ||| Sbjct 216263 ACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCCTCG 216204 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || || || || || ||||| || Sbjct 216203 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGG 216144 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || |||||| || || |||||||||||| || || || ||||| Sbjct 216143 ATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGT 216094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109474336015937