Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq246 105 4e-18 seq35 95.1 8e-15 >seq246 Length=221927 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| || | || | ||| | |||||| || ||||||||||| || ||||| Sbjct 103086 CCACCGCGCAATCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGAC 103145 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || || || || | || ||||||||| | || Sbjct 103146 AGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGG 103205 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | || | || | ||| || Sbjct 103206 ATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACT 103265 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| ||||| ||||| ||||| || |||||||||||| Sbjct 103266 TCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCATA 103313 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 |||| |||||||| | ||||| || ||||| ||||| ||||| || || | | | Sbjct 102870 CTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGACAGTGTCCTGCCG 102929 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||| ||| || || || || || || || ||||||||| | || | || |||||| Sbjct 102930 TCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTG 102989 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| |||||| | || | || | ||| || || | ||| ||| Sbjct 102990 TCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTGATG 103049 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || |||||||| || |||||||||||| Sbjct 103050 GTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATA 103085 >seq35 Length=320448 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||||| || ||||| ||||| |||||||| ||| | || | || || Sbjct 216263 ACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCCTCG 216204 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | || |||||||| | || | ||||||||||| Sbjct 216203 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGG 216144 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| | ||| | |||||| |||| ||| ||||| Sbjct 216143 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGT 216088 Query 34949 TTTTCCCGTGA 34959 ||| ||||||| Sbjct 216087 TTTACCCGTGA 216077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631578242808