Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13 109 6e-19 >seq13 Length=329804 Score = 109 bits (120), Expect = 6e-19 Identities = 290/441 (66%), Gaps = 4/441 (1%) Strand=Plus/Minus Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185 ||||||||||| || || |||| | | | ||||| || ||||| || ||||| | | | Sbjct 256214 TCAAATTCATCGCCGTAGACATCAGCGAGACCAGGGCACTCATTTGGGCACATGAGAGTC 256155 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245 || | | || || || | |||| || | |||||| ||||| || || || Sbjct 256154 CAGGTGCCGTTATCTTGGACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAG 256095 Query 48246 AAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATT 48305 | || | | | | |||||| || || ||| | || || || ||| ||| Sbjct 256094 AGGTCACGGGCACGGACTTCTTCTTTTCCGTGGTTCTTACGGAGATCCAGGAAGGCCAAA 256035 Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365 | ||| ||||||||||| || | |||||| || | ||||||| ||||| ||||| ||| Sbjct 256034 ACATCCGCATGCCATGGCTCGAGATATATGGCAAAGGCACCTGGGCGTTTGTTACCACCT 255975 Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425 || || | ||| |||||||| ||||| | || | | ||| || || | |||||| || Sbjct 255974 TGGTCCACATACCTGGCAGTGTTGTTGAACACGCGGAGCATGGGCACCAGACCATTGGAG 255915 Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACTAATTGAAATAC 48483 | || ||||| || ||| || ||| | ||||| ||| | ||| | || Sbjct 255914 GTGCCGTTGGTACCGCTAATGTAGGAGCCAGTTGCTCTGATACGGTGGGCATT--CAGAC 255857 Query 48484 CTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTT 48543 | || ||||| || | || || || | |||||| || || || || || || || | Sbjct 255856 CGATTCCACCAGCGTTCTTGGAGATCATGGCACACGTCTTCAGTGTGTCGTAGATACCAT 255797 Query 48544 CTATACTATCATCTATCATAT 48564 | || || ||||| |||||| Sbjct 255796 CAATGCTGTCATCCTTCATAT 255776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105209530040