Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09]
511 sequences; 25,022,896 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq13 109 6e-19
>seq13
Length=329804
Score = 109 bits (120), Expect = 6e-19
Identities = 290/441 (66%), Gaps = 4/441 (1%)
Strand=Plus/Minus
Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185
||||||||||| || || |||| | | | ||||| || ||||| || ||||| | | |
Sbjct 256214 TCAAATTCATCGCCGTAGACATCAGCGAGACCAGGGCACTCATTTGGGCACATGAGAGTC 256155
Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245
|| | | || || || | |||| || | |||||| ||||| || || ||
Sbjct 256154 CAGGTGCCGTTATCTTGGACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAG 256095
Query 48246 AAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATT 48305
| || | | | | |||||| || || ||| | || || || ||| |||
Sbjct 256094 AGGTCACGGGCACGGACTTCTTCTTTTCCGTGGTTCTTACGGAGATCCAGGAAGGCCAAA 256035
Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365
| ||| ||||||||||| || | |||||| || | ||||||| ||||| ||||| |||
Sbjct 256034 ACATCCGCATGCCATGGCTCGAGATATATGGCAAAGGCACCTGGGCGTTTGTTACCACCT 255975
Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425
|| || | ||| |||||||| ||||| | || | | ||| || || | |||||| ||
Sbjct 255974 TGGTCCACATACCTGGCAGTGTTGTTGAACACGCGGAGCATGGGCACCAGACCATTGGAG 255915
Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACTAATTGAAATAC 48483
| || ||||| || ||| || ||| | ||||| ||| | ||| | ||
Sbjct 255914 GTGCCGTTGGTACCGCTAATGTAGGAGCCAGTTGCTCTGATACGGTGGGCATT--CAGAC 255857
Query 48484 CTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTT 48543
| || ||||| || | || || || | |||||| || || || || || || || |
Sbjct 255856 CGATTCCACCAGCGTTCTTGGAGATCATGGCACACGTCTTCAGTGTGTCGTAGATACCAT 255797
Query 48544 CTATACTATCATCTATCATAT 48564
| || || ||||| ||||||
Sbjct 255796 CAATGCTGTCATCCTTCATAT 255776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562105209530040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |