Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-27 seq497 123 3e-22 seq168 109 7e-18 seq434 107 2e-17 seq13 91.5 2e-12 >seq2 Length=347899 Score = 140 bits (154), Expect = 4e-27 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1592180 ATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTG 1592239 |||||||| ||||||||| | || |||||| | ||||| ||| | || |||||| | || Sbjct 87581 ATCCTCGCAGCCAACTACATGGATATCAAGGCCCTGCTTGATGTCGGCTGCAAGACCGTT 87640 Query 1592240 GCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || Sbjct 87641 GCCAACATGATCAAGGGCAAGTCGCCTGAGGAAATCCGCAAGACCTTTAACATCCAG 87697 >seq497 Length=111328 Score = 123 bits (136), Expect = 3e-22 Identities = 181/255 (71%), Gaps = 7/255 (3%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || ||||||||| ||||| ||| ||| |||||| | | Sbjct 105067 CCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACCTGGCCTCTGGGATCT 105126 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||| |||| || || | ||||||||| |||||||| ||| ||| |||| Sbjct 105127 GCACCTCACCACTGAAACGCTCGACAAGGTTCTCGTTGACGATGCCATCGGAGGCAGCGA 105186 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC-----CCA 869805 | || || || ||||| ||| || |||||||||||| ||| ||| | ||| Sbjct 105187 AGAAGGCGAGAACGTGGGAGATGAAAAAGCGCTCGTCGTCATTGA--GACGCTTGTTCCA 105244 Query 869806 GTGGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTT 869865 || | || | || || | ||||||||||||||||| |||||||| ||||| Sbjct 105245 GTCGTGAAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAAGAGGCCTCTGCCTT 105304 Query 869866 TTTGTACATCTCCCA 869880 |||||||||| ||| Sbjct 105305 CTTGTACATCTGCCA 105319 Score = 118 bits (130), Expect = 1e-20 Identities = 191/270 (71%), Gaps = 15/270 (6%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| ||| || | ||||||||| |||||||||||||| ||||||| | | Sbjct 104808 TCGTTGGAGAAGGTGAGACCTGCCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAG--G 104865 Query 869261 AAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAA 869318 || || || ||||| ||||| ||||| |||||||| || | || |||| ||| | Sbjct 104866 CAAATGAACCAGAGAAGAAGATACCCTCAACGGCGGCGAAAGCAATAAGCCTGCAGGCGA 104925 Query 869319 AGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCA 869375 | || || | ||||| |||||||| ||| |||||||| ||||| || | | Sbjct 104926 ATGT------GCTGTTCTTGTCGCTGATCCACCTCAAAGCCCAGTCAGCCTTCTTGCGGA 104979 Query 869376 CCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACA 869434 | || | ||||||||||| ||||||| |||||| | | || || ||| Sbjct 104980 TGCAAGGAATGTTGTCGATGGCGTTGAAGAGGTAGGTCCTCTGC-TTGGGTTCACTGATG 105038 Query 869435 TAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 ||||||||||| ||||| || || || ||| Sbjct 105039 TAGGTGTCGATGAGGAGAGAGTATGTTTCC 105068 Score = 111 bits (122), Expect = 2e-18 Identities = 172/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | ||| || |||||||||||||| |||| || || Sbjct 104472 GCCTTCTGGTAGTCACCGACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGGGAAATG 104531 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | | ||||||||| | ||||| | || | Sbjct 104532 TTCTCCATGAAGTCGAAGGGGTTAGTGGCATGGTAGTGCTTGCTGTTGCCGAG-GGCGAG 104590 Query 868811 -AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 || || ||||| || || ||||||||||||||||||||||| ||| ||||| |||| Sbjct 104591 TAGGAGACGGTCTGCAACGAACTCGATGTACTGGCACATGAGCTTGGCATTCATACCGAG 104650 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 | ||| ||||| | || | | ||||| | ||| || |||||||||||||||| Sbjct 104651 CAACGCACAAGGCAGGGCGTCAGTAAGGAACTCCTGCTCAATAGCGACGGCCTCGACGAT 104710 Query 868930 GAT 868932 ||| Sbjct 104711 GAT 104713 >seq168 Length=261402 Score = 109 bits (120), Expect = 7e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||||||| ||||| ||||| || ||| ||||| || |||| ||||| ||| Sbjct 4899 GACAGCATCGGTGGCACAGTGACCTGTGTGATCCGCAATTGCCCCTCAGGTCTCGGAGAG 4958 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 ||||||||||| ||| | |||||| ||| || || |||||||| ||||| || | ||| Sbjct 4959 CCGTGCTTTGATAAGTTGGAGGCCAAGCTGGCGCATGCCATGCTTTCGATTCCATCGACC 5018 Query 19167 AAGGGATTCGAGATTGGC 19184 ||||| || ||||| ||| Sbjct 5019 AAGGGCTTTGAGATCGGC 5036 >seq434 Length=156004 Score = 107 bits (118), Expect = 2e-17 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | ||| ||||| |||| ||||||||||| || | | || Sbjct 27407 GCTTGGCCAGCTCACCGGGGAGGATGAGGCGGACGGATGTCTGGATCTCACGGGAGGAGA 27466 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || || || | ||||||||| ||| ||| |||| | Sbjct 27467 TGGTGGACTTCTTGTTGTAGGCAGCGAGCTTGGAGGCCTCGGTTGCGACGCGCTCGAAGA 27526 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || ||||||| || ||||| | ||||||||| || ||| |||| Sbjct 27527 TGTCGTTGACGAAGGAGTTCAGGATGGACATGGCACGGTTGGAGATACCAGTGTCTGGGT 27586 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||||||||| || || ||| Sbjct 27587 GGACCTGCTTGAGGACTGTGGAGA 27610 >seq13 Length=329804 Score = 91.5 bits (100), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| || || | || |||| ||| || ||||||||||||||||| || || ||||| Sbjct 255974 TGGTCCACATACCTGGCAGTGTTGTTGAACACGCGGAGCATGGGCACCAGACCATTGGAG 255915 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||||||| || | ||||| ||| | || | | ||| || | ||| Sbjct 255914 GTGCCGTTGGTACCGCTAATGTAGGAGCCAGTTGCTCTGATACGGTGGGCATTCAGACCG 255855 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || || ||||||||| | || ||| || || ||||||||||| || || Sbjct 255854 ATTCCACCAGCGTTCTTGGAGATCATGGCACACGTCTTCAGTGTGTCGTAGATACCATCA 255795 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGA 1630280 || ||| ||||||| || | ||| |||||||| Sbjct 255794 ATGCTGTCATCCTTCATATCGATGAGGAAGCACGA 255760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107097264946987