Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13 154 1e-32 seq246 116 3e-21 >seq13 Length=329804 Score = 154 bits (170), Expect = 1e-32 Identities = 478/727 (66%), Gaps = 31/727 (4%) Strand=Plus/Minus Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 || |||||||| | ||||| || || || ||| || |||||| | |||| ||| | Sbjct 256241 TCACGCTCGTATCTCTCGTAAAGCTCTTCAAATTCATCGCCGTAGACATCAGCGAGACCA 256182 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 | |||| | || |||||||| | ||| |||||| | | ||| ||| ||||||| Sbjct 256181 GGGCACTCATTTGGGCACATGAGAGTCCAGGTGCCGTTATCTTGGACACGCTTCATGAAG 256122 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC-----CTTCTTATCTTCCGAAC 139471 ||||| |||||||| | ||| | | | || || || |||||| | ||||| Sbjct 256121 AGATCTGGAATCCAGAGGGCGTAGAAGAGGTCACGGGCACGGACTTCTTCTTTTCCGTGG 256062 Query 139472 CCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGA 139531 | ||||| | | ||||| | ||||| || || |||||||| || ||||| | Sbjct 256061 T--TCTTACGG---AGATCCAGGAAGGCCAAAACATCCGCATGCCATGGCTCGAGATATA 256007 Query 139532 TGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGA 139588 |||| | || ||| |||||| |||||||| || || | | ||| || |||| Sbjct 256006 TGGCAAAGGCACCTGGGCGTTTGTTACCACCTTGGTCCACATACCTGGCAGTGTTGTTGA 255947 Query 139589 ATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-- 139644 | ||||| | ||| ||| ||||||| | | || |||||||| | | ||| ||| Sbjct 255946 ACACGCGGAGCATGGGCACCAGACCATTGGAGGTGCCGTTGGTACCGCTAATGTAGGAGC 255887 Query 139645 CTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATT 139704 | ||||| || ||| || |||| | |||||||| || | ||||| || Sbjct 255886 CAGTTGCT--CTGATACGG--TGGGCATTCAGACCGATTCCACCAGCGTTCTTGGAGATC 255831 Query 139705 AAAACGCAATCGCGT--AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGA 139762 | | || || | | ||| ||||| ||||| |||||||| |||| ||| || Sbjct 255830 ATGGCACA--CGTCTTCAGTGTGTCGTAGATACCATCAATGCTGTCATCCTTCATATCGA 255773 Query 139763 CCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCG 139822 || ||||| || | ||| || | | || || || || || || || ||| | Sbjct 255772 TGAGGAAGCACGAGGCAAGCTGGGCTTGTGGGGTACCAGCACTGAAGAGGGTTGGAGAGG 255713 Query 139823 CGTGCGTGAAC-ATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCC 139881 |||| ||||| | ||||| |||||||| | |||||| || || || ||| |||| ||| Sbjct 255712 CGTGTGTGAAGTACTTGTTG-GACATCAAGTTGTACGTCTCAATTGCACTCTCAATGTCC 255654 Query 139882 CTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCG 139941 ||||| ||||| |||| || ||||| | ||| || ||| ||||| || ||| Sbjct 255653 TCGCCGTGAATACCCACAGCAACACGCATGATCATGTGCTGGGGACGTTCAGCGACCTTT 255594 Query 139942 CCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGT 139999 || ||||| || || ||| |||| || ||||| | || ||||| |||| Sbjct 255593 CCATCGATACGCAGGAGGTAGGACC--TCTCCAGTGTCTTAAAACCGAAGTATTGGTAGT 255536 Query 140000 TGAAATC 140006 ||||||| Sbjct 255535 TGAAATC 255529 >seq246 Length=221927 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || ||||| || | | Sbjct 103312 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTGGAAGTGGAGAGCTCA 103253 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||| ||||| || || || || || Sbjct 103252 GACACCATCGACAACGTCAAGTCAAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAG 103193 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| || || || ||||||||||| | | | |||| ||||| ||| Sbjct 103192 CAGAGATTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCGGATTACAAC 103133 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| ||| | || | |||||||||| || Sbjct 103132 ATTCAGAAGGAGAGCACACTCCACCTTGTCCTCAGATTGCGCGGTGG 103086 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || ||||| || | | Sbjct 103084 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTGGAGAGCTCA 103025 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||| ||||| || || || || || Sbjct 103024 GACACCATCGACAACGTCAAGTCAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 102965 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || || || || ||| ||||||| || | ||||||| || ||| Sbjct 102964 CAGCGTCTCATTTTCGCAGGCAAGCAGTTGGAGGACGGCAGGACACTGTCAGACTACAAC 102905 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || ||||||||| || || | || || || Sbjct 102904 ATCCAGAAGGAGAGCACTCTCCACTTGGTGCTGAGACTTCGTGGTGG 102858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || | || Sbjct 103540 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 103481 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 103480 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 103421 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || || || || || |||||| | | | | ||||| || || Sbjct 103420 CAGCGATTGATCTTCGCTGGCAAGCAACTCGAGGATGGTCGCACCCTCTCAGACTACAAT 103361 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 103360 ATCCAGAAGGAGTCCACCCTCCAC 103337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894726279080