Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq434 165 1e-34 seq497 145 1e-28 seq2 141 1e-27 seq13 95.1 2e-13 >seq434 Length=156004 Score = 165 bits (182), Expect = 1e-34 Identities = 179/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| || || || ||||||||| ||||||| || ||| | | Sbjct 27369 GTACTTGGTGACGGCCTTGGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCACCGGGGAG 27428 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| ||||| |||| ||||||||||| |||| | ||| ||| |||||| || | Sbjct 27429 GATGAGGCGGACGGATGTCTGGATCTCACGGGAGGAGATGGTGGACTTCTTGTT-GTAGG 27487 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | ||||||||| ||| ||| |||| ||||||||||| || ||||||| Sbjct 27488 CAGCGAGCTTGGAGGCCTCGGTTGCGACGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 27547 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||| ||||| | ||||||||| || ||| ||||| ||||||||||| || Sbjct 27548 GGATGGACATGGCACGGTTGGAGATACCAGTGTCTGGGTGGACCTGCTTGAGGAC 27602 >seq497 Length=111328 Score = 145 bits (160), Expect = 1e-28 Identities = 220/308 (71%), Gaps = 9/308 (3%) Strand=Plus/Plus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 |||||| ||| ||| || | ||||||||| |||||||||||||| ||||||| | Sbjct 104808 TCGTTGGAGAAGGTGAGACCTGCCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAG--G 104865 Query 794422 AAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAA 794479 || || || ||||| ||||| ||||| |||||||| || | | |||| ||| | Sbjct 104866 CAAATGAACCAGAGAAGAAGATACCCTCAACGGCGGCGAAAGCAATAAGCCTGCAGGCGA 104925 Query 794480 AAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCG 794539 | ||| | || | | |||||||| ||| ||||| || ||||| || | | Sbjct 104926 ATGTGCT---GTTCTTGTCGCTGATCCACCTCAAAGCCCAGTCAGCCTTCTTGCGGATGC 104982 Query 794540 AGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAG 794598 | || | ||||||||||| ||||||| ||||| ||| || || ||| |||| Sbjct 104983 AAGGAATGTTGTCGATGGCGTTGAAGAGGTAGGTCC-TCTGCTTGGGTTCACTGATGTAG 105041 Query 794599 GTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCA 794658 |||||||||||||| ||||| || || ||||||||||| || || ||||||||| || Sbjct 105042 GTGTCGATGAGGAGAGAGTATGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCG 105101 Query 794659 TAAAAGCA 794666 || ||||| Sbjct 105102 TAGAAGCA 105109 Score = 100 bits (110), Expect = 5e-15 Identities = 172/250 (69%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || | | ||| || |||||||||||||| ||| Sbjct 104464 TGACACCAGCCTTCTGGTAGTCACCGACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGCGA 104523 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | ||| ||||| | | |||||||||| | |||| Sbjct 104524 GGGAAATGTTCTCCATGAAGTCGAAGGGGTTAGTGGCATGGTAGTGCTTGCTGTTGCCGA 104583 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | || || ||||| || ||||| || ||||||||||||||||| ||| |||| Sbjct 104584 GGGCGAGTAGGAGACGGTCTGCAACGAACTCGATGTACTGGCACATGAGCTTGGCATTCA 104643 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 | |||| | ||| ||||| | || | | ||||| | ||| || ||||||||| Sbjct 104644 TACCGAGCAACGCACAAGGCAGGGCGTCAGTAAGGAACTCCTGCTCAATAGCGACGGCCT 104703 Query 794131 CGATGATGAT 794140 ||| |||||| Sbjct 104704 CGACGATGAT 104713 >seq2 Length=347899 Score = 141 bits (156), Expect = 1e-27 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||| |||||| | || || || | |||||||| ||||||||| | || |||||| Sbjct 87552 AGGTGGACCAAGAAATGCTGTTCGAAATTATCCTCGCAGCCAACTACATGGATATCAAGG 87611 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 |||| || ||| | || ||||||||||| |||||| | ||||||||||||||||| |||| Sbjct 87612 CCCTGCTTGATGTCGGCTGCAAGACCGTTGCCAACATGATCAAGGGCAAGTCGCCTGAGG 87671 Query 2035732 ACATCCGCAAGACCTTTAACATCAAG 2035757 | ||||||||||||||||||||| || Sbjct 87672 AAATCCGCAAGACCTTTAACATCCAG 87697 >seq13 Length=329804 Score = 95.1 bits (104), Expect = 2e-13 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||| ||||| | || |||| ||| || ||||||||||||||||| || || ||||| Sbjct 255974 TGGTCCACATACCTGGCAGTGTTGTTGAACACGCGGAGCATGGGCACCAGACCATTGGAG 255915 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||||||||| || | ||||| ||| | || | | ||| || | ||| Sbjct 255914 GTGCCGTTGGTACCGCTAATGTAGGAGCCAGTTGCTCTGATACGGTGGGCATTCAGACCG 255855 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || || ||||||||| | || ||| | ||||| || |||||||| || || Sbjct 255854 ATTCCACCAGCGTTCTTGGAGATCATGGCACACGTCTTCAGTGTGTCGTAGATACCATCA 255795 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755 || ||| ||||||| || | || |||||||| Sbjct 255794 ATGCTGTCATCCTTCATATCGATGAGGAAGCACGA 255760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916192042599329