Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq246 149 4e-31 seq35 118 7e-22 >seq246 Length=221927 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| || ||||| ||||| | |||||||||||||||||||| || ||||| Sbjct 103086 CCACCGCGCAATCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGAC 103145 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || | || ||||| ||||| || |||||||||| || ||||||||| | || Sbjct 103146 AGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGG 103205 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || ||| |||||| | || | || | ||| || Sbjct 103206 ATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACT 103265 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 103266 TCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||||||| || || ||||| || ||| |||| |||| Sbjct 103329 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCTGAGAGGGTGCGACCATCC 103388 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || |||||||||| ||| ||||||||| | || | ||||||||||| Sbjct 103389 TCGAGTTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 103448 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| || | ||| || || | ||| || Sbjct 103449 TGGATCTTGGACTTCAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 103504 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || |||||||| || ||||||||||| Sbjct 103505 GGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 103540 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| |||| ||| | |||||||||||||| ||||| ||||| || || | | | Sbjct 102870 CTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGACAGTGTCCTGCCG 102929 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||| ||||| || ||||| || || || ||||||||| | || | || |||||| Sbjct 102930 TCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTG 102989 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || ||| |||||| | || | || | ||| || || | ||| ||| Sbjct 102990 TCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTGATG 103049 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || ||||| || ||||||||||| Sbjct 103050 GTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 103557 AGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 103616 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||| || || ||||||||| | || | || |||||||| Sbjct 103617 TCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCC 103676 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || || |||||| |||| || |||||| Sbjct 103677 TGGATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTC 103736 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 103737 TTGCCGGTGA 103746 >seq35 Length=320448 Score = 118 bits (130), Expect = 7e-22 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||||| ||||||||||||||| ||||| |||||||| ||| | || | || Sbjct 216267 CAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTC 216208 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||||||||||| || |||||||| | || | ||||||||||| Sbjct 216207 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTC 216148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690771646309