Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq497 232 1e-54 seq434 116 5e-20 seq13 96.9 5e-14 >seq497 Length=111328 Score = 232 bits (256), Expect = 1e-54 Identities = 369/517 (71%), Gaps = 32/517 (6%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||||||| || ||||||||||||||| |||| | Sbjct 105323 GATCTGGCAGATGTAC-AAGAAGGCAGAGGCCTCTTTCTGGACCGCCGAGGAGATCGATC 105265 Query 1455835 TCGGCGCCGA----CACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATT 1455885 | | || |||| ||||| | ||| | | |||||||||||| || Sbjct 105264 TGTCCAAGGATCTTCACG----ACTGGAACAAGCGTCTC--AATGACGACGAGCGCTTTT 105211 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 ||||| ||||| |||||||| || ||| ||| |||||||||||| ||||||||| Sbjct 105210 TCATCTCCCACGTTCTCGCCTTCTT-CGCTGCCTCCGATGGCATCGTCAACGAGAACCTT 105152 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 | || || || | ||||| || | |||||||| | | || ||||| |||||| Sbjct 105151 GTCGAGCGTTTCAGTGGTGAGGTGCAGATCCCAGAGGCCAGGTGCTTCTACGGATTCCAG 105092 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 ||| || || ||||||||||| ||||| ||||| ||||| |||||||||||| ||| Sbjct 105091 ATCATGATGGAGAACATCCACTCGGAAACATACTCTCTCCTCATCGACACCTACATCAGT 105032 Query 1456066 GACCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAA 1456124 || || ||| ||||| ||||||| ||||||||||| | || | | | || Sbjct 105031 GAACCCAAGCAGA-GGACCTACCTCTTCAACGCCATCGACAACATTCCTTGCATCCGCAA 104973 Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||||| |||||||| ||| |||||||| ||||| | || ||| || ||| Sbjct 104972 GAAGGCTGACTGGGCTTTGAGGTGGATCAGCGACAAGAACAGC----ACA-TTCGCCTGC 104918 Query 1456182 CGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGG--CAGTTTCTGCGCCA 1456238 |||| | | || |||| ||| ||||| ||||| ||||| || || || | | ||| Sbjct 104917 AGGCTTATTGCTTTCGCCGCCGTTGAGGGTATCTTCTTCTCTGGTTCATTTGC--CTCCA 104860 Query 1456239 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||| |||||||||||||| ||||||||| | ||||| Sbjct 104859 TCTTCTGGCTCAAGAAGCGTGGCCTCATGGCAGGTCT 104823 Score = 100 bits (110), Expect = 4e-15 Identities = 156/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||||||||||||||||| || ||| | ||||| | | || | ||||| ||| Sbjct 104713 ATCATCGTCGAGGCCGTCGCTATTGAGCAGGAGTTCCTTACTGACGCCCTGCCTTGTGCG 104654 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 | |||| ||||| |||| |||||||||||||||||| | | || || || ||||| | Sbjct 104653 TTGCTCGGTATGAATGCCA-AGCTCATGTGCCAGTACATCG-AGTTCGTTGCAGACCGTC 104596 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || || |||||| | | |||||||||| | | ||||| ||| | ||| Sbjct 104595 TCCTACTCGCCCTCGGCAACAG-CAAGCACTACCATGCCACTAACCCCTTCGACTTCATG 104537 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||| || || |||| |||||||||||||| || ||| Sbjct 104536 GAGAACATTTCCCTCGCTGGCAAGACCAACTTCTTTGAG 104498 >seq434 Length=156004 Score = 116 bits (128), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||| || || ||||||||||| ||||| || | | ||| |||||| ||| Sbjct 27610 TCTCCACAGTCCTCAAGCAGGTCCACCCAGACACTGGT-----ATC-TCCAACCGTGCCA 27557 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 |||| ||| ||||||| || ||||||||||| |||| ||| ||| ||||||||| Sbjct 27556 TGTCCATCCTGAACTCCTTCGTCAACGACATCTTCGAGCGCGTCGCAACCGAGGCCTCCA 27497 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 || || || ||||||| ||| ||| | | || ||||||||||| |||| | Sbjct 27496 AGCTCGCTGCCTACAACAAGAAGTCCACCATCTCCTCCCGTGAGATCCAGACATCCGTCC 27437 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| ||| | | ||| || ||||||| ||||||||| || || ||||||| Sbjct 27436 GCCTCATCCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCGGAAGGCACCA 27386 >seq13 Length=329804 Score = 96.9 bits (106), Expect = 5e-14 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 ||||||||| |||||| | | |||||| | |||||| || | || | |||| | |||| Sbjct 256274 AGATCTGGTATGCCATTCTAGAGGCCCAGACCGAGACTGGAAACCCATTCATGCTTTACA 256333 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAAC 262210 ||||||| | ||||| | |||||||| ||||||| ||||||| | ||| ||||| Sbjct 256334 AGGACGCTGCCAACCGTAAGAGCAACCAAAAGAACCTCGGCACCATCCGCAG-CTCCAAC 256392 Query 262211 CTGTGCACCGAGATC 262225 || |||||||||||| Sbjct 256393 CTCTGCACCGAGATC 256407 Score = 86.0 bits (94), Expect = 9e-11 Identities = 173/257 (67%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || || ||||| | ||| || || || | | ||| | | |||||||| || | || Sbjct 255718 CCAACCCTCTTCAGTGCTGGTACCCCACAAGCCCAGCTTGCCTCGTGCTTCCTCATCGAT 255777 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| || || || || ||||| ||||| || ||| ||| || | |||||| Sbjct 255778 ATGAAGGATGACAGCATTGATGGTATCTACGACACACTGAAGACGTGTGCCATGATCTCC 255837 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| || || || |||||| | || ||| | | || | ||| ||||| | Sbjct 255838 AAGAACGCTGGTGGAATCGGTCTGAATGCCCACCGTATCAGAGCAACTGGCTCCTACATT 255897 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || ||||||||| ||||| || || ||||||||||| ||||| || ||| |||| Sbjct 255898 AGCGGTACCAACGGCACCTCCAATGGTCTGGTGCCCATGCTCCGCGTGTTCAACAACACT 255957 Query 260165 GCGCGCTACGTCGACCA 260181 || | || || ||||| Sbjct 255958 GCCAGGTATGTGGACCA 255974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177761913110782