Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09]
511 sequences; 25,022,896 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq246 114 1e-20
seq35 105 6e-18
>seq246
Length=221927
Score = 114 bits (126), Expect = 1e-20
Identities = 167/232 (72%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568
||||||||| | |||| |||||| || | || |||||||| || |||||||| || |
Sbjct 102857 TCCACCACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGA 102916
Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628
|| || | |||| |||| |||||| || || || || | ||||||||||| | ||
Sbjct 102917 CAGTGTCCTGCCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGG 102976
Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATT 35684
|| || |||||||| ||||||| ||| | |||| | | ||||| |||| |
Sbjct 102977 AATGCCTTCCTTGTCTTGGATCTTTGACTTGA-CGTTGTCGATGGTGTCTGAGCTC---T 103032
Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| |||| ||||| || || || |||| ||| || || || ||||||||
Sbjct 103033 CCACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084
Score = 113 bits (124), Expect = 4e-20
Identities = 148/201 (74%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599
|| |||||||| |||||||||||||| | || ||| || |||| ||||||||||||||
Sbjct 103116 GTGCTCTCCTTCTGAATGTTGTAATCCGACAGGGTACGGCCGTCCTCCAGCTGCTTACCA 103175
Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659
|| || ||||| | ||||||||| | || | || |||||||| ||||||| |||
Sbjct 103176 GCGAAGATCAATCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTTGACTTG 103235
Query 35660 AGAGTTG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAA 35715
| |||| | | ||||| |||| ||||| |||| ||||| || || || || |
Sbjct 103236 A-CGTTGTCGATGGTGTCTGAGCTC---TCCACTTCCAGGGTGATGGTCTTTCCGGTGAG 103291
Query 35716 AGTTTTCACAAATATCTGCAT 35736
|| || || || ||||||||
Sbjct 103292 GGTCTTGACGAAGATCTGCAT 103312
Score = 89.7 bits (98), Expect = 5e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || ||||| || | | ||| || | || || || ||||| || || ||
Sbjct 103349 CTCCTTCTGGATATTGTAGTCTGAGAGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAA 103408
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | || | | |||||||||| |||||| ||||| | |
Sbjct 103409 GATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATT 103468
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || |||||||| | ||||| || || || || | || || ||
Sbjct 103469 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGAC 103528
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 103529 GAAGATCTGCAT 103540
Score = 82.4 bits (90), Expect = 7e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | ||| || |||| || || ||||| || |||||
Sbjct 103577 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 103636
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
|| | ||||||||||| | ||||| || ||||||||| ||||||
Sbjct 103637 GATAAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTT 103684
>seq35
Length=320448
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || |||| || | || |||||||| || |||||||| || |
Sbjct 216281 CCACCACGCAGGCGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 216222
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| || |||||||| || || || ||||| ||||||||||||| ||
Sbjct 216221 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 216162
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||||| |||||| ||| | | | | | ||||| || || |||
Sbjct 216161 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACC 216102
Query 35690 TCCACCGTGATCGTTTTACCCGT 35712
|| | ||||| |||||||||||
Sbjct 216101 TCGAGGGTGATGGTTTTACCCGT 216079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450790720555880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |