Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq246 114 1e-20 seq35 105 6e-18 >seq246 Length=221927 Score = 114 bits (126), Expect = 1e-20 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | |||| |||||| || | || |||||||| || |||||||| || | Sbjct 102857 TCCACCACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGA 102916 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || || | |||| |||| |||||| || || || || | ||||||||||| | || Sbjct 102917 CAGTGTCCTGCCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGG 102976 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATT 35684 || || |||||||| ||||||| ||| | |||| | | ||||| |||| | Sbjct 102977 AATGCCTTCCTTGTCTTGGATCTTTGACTTGA-CGTTGTCGATGGTGTCTGAGCTC---T 103032 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||| ||||| || || || |||| ||| || || || |||||||| Sbjct 103033 CCACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 113 bits (124), Expect = 4e-20 Identities = 148/201 (74%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| |||||||||||||| | || ||| || |||| |||||||||||||| Sbjct 103116 GTGCTCTCCTTCTGAATGTTGTAATCCGACAGGGTACGGCCGTCCTCCAGCTGCTTACCA 103175 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || ||||| | ||||||||| | || | || |||||||| ||||||| ||| Sbjct 103176 GCGAAGATCAATCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTTGACTTG 103235 Query 35660 AGAGTTG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAA 35715 | |||| | | ||||| |||| ||||| |||| ||||| || || || || | Sbjct 103236 A-CGTTGTCGATGGTGTCTGAGCTC---TCCACTTCCAGGGTGATGGTCTTTCCGGTGAG 103291 Query 35716 AGTTTTCACAAATATCTGCAT 35736 || || || || |||||||| Sbjct 103292 GGTCTTGACGAAGATCTGCAT 103312 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| || | | ||| || | || || || ||||| || || || Sbjct 103349 CTCCTTCTGGATATTGTAGTCTGAGAGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAA 103408 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | | |||||||||| |||||| ||||| | | Sbjct 103409 GATCAATCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATT 103468 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || |||||||| | ||||| || || || || | || || || Sbjct 103469 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGAC 103528 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 103529 GAAGATCTGCAT 103540 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || |||| || || ||||| || ||||| Sbjct 103577 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 103636 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 || | ||||||||||| | ||||| || ||||||||| |||||| Sbjct 103637 GATAAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTT 103684 >seq35 Length=320448 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||| || | || |||||||| || |||||||| || | Sbjct 216281 CCACCACGCAGGCGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 216222 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || || || ||||| ||||||||||||| || Sbjct 216221 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 216162 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | ||||| || || ||| Sbjct 216161 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACC 216102 Query 35690 TCCACCGTGATCGTTTTACCCGT 35712 || | ||||| ||||||||||| Sbjct 216101 TCGAGGGTGATGGTTTTACCCGT 216079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450790720555880