Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq246 109 6e-19 seq35 102 8e-17 >seq246 Length=221927 Score = 109 bits (120), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || ||| || | |||| || ||| | ||| || ||| ||||| || ||||||||||| Sbjct 102854 CTGTCCACCACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTC 102913 Query 134543 -GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGG 134601 | || | || ||| || | ||| |||||||| ||||| | ||||||||| || | Sbjct 102914 TGACAGTGTCCTG-CCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTG 102972 Query 134602 GCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATT 134661 | || |||||||| || ||||| || ||| ||||| ||| | ||||| || | Sbjct 102973 GGGGAATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCT 103032 Query 134662 CCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || || || ||||| || ||||| | ||| || ||||| || ||||| Sbjct 103033 CCACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || ||||| ||||| || |||||||||||| || |||| | ||| || Sbjct 103560 ACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCA 103619 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || ||||| || | ||||||||| || || || |||||||| || || || Sbjct 103620 AGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGG 103679 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | ||||| || || || || || ||||| ||||| || Sbjct 103680 ATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTG 103739 Query 134685 CCGGT 134689 ||||| Sbjct 103740 CCGGT 103744 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||| ||||| ||||||||||| || | ||| | ||| || Sbjct 103104 ACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGACAGGGTACGGCCGTCCTCC 103163 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || || ||||| | |||||| || || || |||||||| || ||||| Sbjct 103164 AGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGG 103223 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || ||| ||||| ||| | ||||| || ||||| || || || ||||| || Sbjct 103224 ATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTGATGGTCTTT 103283 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || ||||| || ||||| Sbjct 103284 CCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 >seq35 Length=320448 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || ||| ||||| || ||||||||||| | ||| || Sbjct 216272 AGGCGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGA 216213 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || ||||| |||||||| || || || || || || Sbjct 216212 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCC 216153 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || || || || ||||| || Sbjct 216152 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTG 216093 Query 134676 ATGGTTTTACCGGT 134689 ||||||||||| || Sbjct 216092 ATGGTTTTACCCGT 216079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505395171767720