Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq13 178 2e-39 seq497 91.5 2e-13 seq57 91.5 2e-13 >seq13 Length=329804 Score = 178 bits (196), Expect = 2e-39 Identities = 607/939 (65%), Gaps = 9/939 (1%) Strand=Plus/Minus Query 111217 ATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATC 111276 || |||||| | || || || || || || | || || || || |||||| | | Sbjct 256479 ATCGACATAGGTCGGCAGCGCAATAGAGGCAAGGTTACAGACGGCAACCTCATCGGGAGC 256420 Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 |||||||| | || || || || | |||||| || || || || | |||||||| Sbjct 256419 AGTGTACTCAATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTTTG 256360 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||||| |||| || |||||||| |||||| | || | || ||||| ||||| Sbjct 256359 GTTGCTCTTACGGTTGGCAGCGTCCTTGTAAAGCATGAATGGGTTTCCAGTCTCGGTCTG 256300 Query 111397 TGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC 111456 | | ||||| || | ||| | | |||| || | || | | || ||||| Sbjct 256299 GGCCTCTAGAATGGCATACCAGATCTTTTGGGCTCTAACGGTCTCGCGGCCGCGACCCTC 256240 Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 111516 |||||| | ||| || ||||||| || || || | || | |||||| || Sbjct 256239 ACGCTCGTATCTCTCGTAAAGCTCTTCAAATTCATCGCCGTAGACATCAGCGAGACCAGG 256180 Query 111517 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAG 111576 || | ||| || | |||| ||| || || | || ||||||||||| || Sbjct 256179 GCACTCATTTGGGCACATGAGAGTCCAGGTGCCGTTATCTTGGACACGCTTCATGAAGAG 256120 Query 111577 GTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGT 111635 ||||||||||| |||| | ||||| || | ||| || | ||||| | || |||| Sbjct 256119 ATCTGGAATCCAGAGGGCGTAGAAGAGGTCACGGGCACGGA-CTTCTTCTTTTCCGTGGT 256061 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | || | || ||||| ||| | |||||| ||||||||||| ||||| | || | Sbjct 256060 TCTTACGGAGATCCAGGAAGGCCAAAACATCCGCATGCCATGGCTCGAGATATATGGCAA 256001 Query 111696 TAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACG 111751 | || | || | || | |||| | ||||| | || ||| ||| || ||| Sbjct 256000 AGGCACCTGGGCGTTTGTTACC-ACCTTGGTCCACATACCTGGCAGTGTTGTTGAACACG 255942 Query 111752 CGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG 111811 || ||||| || | | ||||| || || || || || | ||| || | | Sbjct 255941 CGGAGCATGGGCACCAGACCATTGGAGGTGCCGTTGGTACCGCTAATGTAGGAGCCAGTT 255882 Query 111812 GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 111871 ||||| | | ||| | || || || || ||||| ||| ||||| |||||| Sbjct 255881 GCTCTGATACGGTGGGCATTCAGACCGATTCCACCAGCGTTCTTGGAGATCATGGCACAC 255822 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | || || | |||||||| | || ||| ||||| | |||| |||||||| Sbjct 255821 GTCTTCAGTGTGTCGTAGATACCATCAATGCTGTCATCCTTCATATCGATGAGGAAGCAC 255762 Query 111932 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 || | ||| | | ||| ||||||||| ||||||||||||| | ||||| |||| Sbjct 255761 GAGGCAAGCTGGGCTTGTGGGGTACCAGCACTGAAGAGGGTTGGAGAGGCGTGTGTGAA- 255703 Query 111992 ATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 112050 ||| | | ||||||| || ||| ||||| | || |||||||| || ||||| || Sbjct 255702 GTACTTGTTGGACATCAAGTTGTACGTCTCAATTGCACTCTCAATGTCCTCGCCGTGAAT 255643 Query 112051 GCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCG 112110 || | || || ||||||| ||||| ||| || ||| || | ||||||| || Sbjct 255642 ACCCACAGCAACACGCATGATCATGTGCTGGGGACGTTCAGCGACCTTTCCATCGATACG 255583 Query 112111 TTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | || ||| | |||| || || || | ||| ||||| Sbjct 255582 CAGGAGGTAGGACCTCTCCAGTGTCTTAAAACCGAAGTA 255544 >seq497 Length=111328 Score = 91.5 bits (100), Expect = 2e-13 Identities = 291/442 (66%), Gaps = 16/442 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| | ||||||||||||||||||||| ||| | ||| |||||| ||||| Sbjct 104481 TAGTCACCGACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGGGAAATGTTCTCCATG 104540 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTG--GCACCCCAACTTGTTTGAGGAGAC 122488 ||||| || || || | || | | || || | || | | | ||||||| Sbjct 104541 AAGTCGAAGGGGTTAGTGGCATGGTAG-TGCTTGCTGTTGCCGAGGGCGAGT-AGGAGAC 104598 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | || |||| ||||||| | |||| || | |||||||||| | || Sbjct 104599 GGTCTGCAACGAACTCGATGTACTGGCACATGAGCTTGGCATTCATACCGAGCAACGCAC 104658 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | || || ||||| | |||| | | |||||| | || ||||| | ||||| | Sbjct 104659 AAGGCAGGGCGTCAGTAAGGAACTCCTGCTCAATAGCGACGGCCTCGACGATGATGGACT 104718 Query 122609 GGAT---AGTTTCGGTAG--TGGGTCTATTACGCAA-AGTCTTGAAGAGCTCCACGGCAA 122662 || || || | || | | || | | | | || |||| || ||| | Sbjct 104719 CGACCAGAGCTTGGTCAGGCTTGTGCT-TGAGGTGAGAGAAAAGAAGG----CA-GGCGA 104772 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| | |||||||| ||||| || || || || |||||| ||||||| || Sbjct 104773 AGTCGGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCTGCCA 104832 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 |||| || |||||||| | ||| | || | | ||||| || |||||||||||||||| Sbjct 104833 TGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAATGAACCAGAGAAGAAGATACCCT 104892 Query 122783 CCACACACGCAAACGCAAAAAG 122804 | || || || |||| ||| Sbjct 104893 CAACGGCGGCGAAAGCAATAAG 104914 >seq57 Length=303147 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGA 11678 |||||| | ||||||||||||||| ||||| | ||||| ||| || ||||| | || Sbjct 23596 CTTGCCTATCGCATCAATCTCATCGATGAAAATGATACAAGGTGTGTTTTTC-CTCGCAT 23538 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 | |||| | ||| || || | | | || ||||| || ||||||||||| || | | Sbjct 23537 TAGCAAACAAATCTCGCACACGTGAAGGGCCAACACCGACGAACATCTCCACGAATTCAG 23478 Query 11739 CGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 |||| ||| | || ||| || || |||||| || || | ||| ||||| | Sbjct 23477 ATCCAGA-CACCGAGAAGAACGGTACCCCTGATTCTCCAGCAGTTGCTTTCGCGAGCAAA 23419 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||||| || ||||| || ||| | ||| | || ||||| ||||||||||| || Sbjct 23418 GTCTTACCAGTACCAGGGGGACCGGAGAGGATTGCACCTCGAGGGATCTTGGCGCC 23363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027988445600