Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq13 237 2e-57 seq497 107 2e-18 >seq13 Length=329804 Score = 237 bits (262), Expect = 2e-57 Identities = 661/1005 (66%), Gaps = 17/1005 (2%) Strand=Plus/Minus Query 118629 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 118688 ||| |||| || |||| || | ||| || ||||| | | | ||||| | | ||| Sbjct 256541 TTTCTGGTAACGACCTGGGTTACTTCGTGGAGCTTCTTGAAGTCAAATCGCTCATTCTGG 256482 Query 118689 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 || |||||| | || || || || || || || ||||| || | |||||| | Sbjct 256481 ATATCGACATAGGTCGGCAGCGCAATAGAGGCAAGGTTACAGACGGCAACCTCATCGGGA 256422 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 |||||||||| || || || ||||| | ||| || || |||||||| | ||||||| Sbjct 256421 GCAGTGTACTCAATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTT 256362 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || ||| ||| || ||||||||||||||| |||| | || ||||| || Sbjct 256361 TGGTTGCTCTTACGGTTGGCAGCGTCCTTGTAAAGCATGAATGGGTTTCCAGTCTCGGTC 256302 Query 118869 TGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCC 118928 |||| || ||||| || | ||||| | ||| || || || | | || ||| Sbjct 256301 TGGGCCTCTAGAATGGCATACCAGATCTTTTGGGCTCTAACGGTCTCGCGGCCGCGACCC 256242 Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 || |||||| | ||| || ||||||| || || || | | || | ||| || Sbjct 256241 TCACGCTCGTATCTCTCGTAAAGCTCTTCAAATTCATCGCCGTAGACATCAGCGAGACCA 256182 Query 118989 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 || || || |||||| | ||||| ||| || || | || |||||||||||| Sbjct 256181 GGGCACTCATTTGGGCACATGAGAGTCCAGGTGCCGTTATCTTGGACACGCTTCATGAAG 256122 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108 || ||||| |||||||| || ||||||| || || || ||||||| | || || Sbjct 256121 AGATCTGGAATCCAGAGGGCGTAGAAGAGGTCACGGGCACGGACTTCTTCTTTTCCGTGG 256062 Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168 || ||| | |||| ||| ||| | |||||| ||||| || || || || | || Sbjct 256061 TTCTTACGGAGATCCAGGAAGGCCAAAACATCCGCATGCCATGGCTCGAGATATATGGC- 256003 Query 119169 ATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 | | | ||| | || |||| | |||| |||||||| |||||| ||| || Sbjct 256002 AAAGGCACCT--GGGCGTTTGTTACCACCTTGGTCCACATACCTGGCAGTGTTGTTGAAC 255945 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACT 119280 || || ||||| || | | ||||| ||| ||| || || || | || || ||| | Sbjct 255944 ACGCGGAGCATGGGCACCAGACCATTGGAGGTGCCGTTGGTACCGCTAATGTAGGAGCC- 255886 Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340 | | ||||||| | |||| | || ||| || || || || ||| ||||| | Sbjct 255885 -AGTTGCTCTGATACGGTGGGCATTCAGACCGATTCCACCAGCGTTCTTGGAGATCATGG 255827 Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400 | ||| | | || || ||||||| ||||| || |||| |||| | ||||||||| Sbjct 255826 CACACGTCTTCAGTGTGTCGTAGATACCATCAATGCTGTCATCCTTCATATCGATGAGGA 255767 Query 119401 AGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459 |||| | | || ||| || || |||||||| ||||||| ||||| | ||||| Sbjct 255766 AGCA-CGAGGCAAGCTGGGCTTGTGGGGTACCAGCACTGAAGAGGGTTGGAGAGGCGTGT 255708 Query 119460 ATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 |||| ||| | | ||||||| || ||| ||||| | | |||||| || || Sbjct 255707 GTGAA-GTACTTGTTGGACATCAAGTTGTACGTCTCAATTGCACTCTCAATGTCCTCGCC 255649 Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATC 119578 ||||||||| | | || ||||| | ||||| ||||| ||| | | ||||| Sbjct 255648 GTGAATACCCACAGCAACACGCATGATCATGTGCTGGGGACGTTCAGCGACCTTTCCATC 255589 Query 119579 GAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 || | | ||||||| | |||||| ||||| | ||| || || Sbjct 255588 GATACGCAGGAGGTAGGACCTCTCCAGTGTCTTAAAACCGAAGTA 255544 >seq497 Length=111328 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| |||||||||||||| || || |||||| ||||||| |||||| || |||||| Sbjct 104787 CCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCTGCCATGAGGCCACGCTTC 104846 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | |||||| |||||||||||||| ||||| || ||||| Sbjct 104847 TTGAGCCAGAAGATGGAGGCAAATGAACCAGAGAAGAAGATACCCTCAACGGCGGCGAAA 104906 Query 130154 GCAA 130157 |||| Sbjct 104907 GCAA 104910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431249745160